RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781217|ref|YP_003065630.1| hypothetical protein
CLIBASIA_05620 [Candidatus Liberibacter asiaticus str. psy62]
         (162 letters)



>gnl|CDD|144936 pfam01527, Transposase_8, Transposase.  Transposase proteins are
          necessary for efficient DNA transposition. This family
          consists of various E. coli insertion elements and
          other bacterial transposases some of which are members
          of the IS3 family.
          Length = 75

 Score = 33.8 bits (78), Expect = 0.024
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 5  KYTKERIDNILA-SFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50
          +Y++E     +  S   G S+S+  ++HGV+  + + W K+ R  L 
Sbjct: 6  RYSEEFKARAVKESLEPGASVSELAREHGVSPATLYKWRKKYRGGLL 52


>gnl|CDD|31483 COG1292, BetT, Choline-glycine betaine transporter [Cell envelope
           biogenesis, outer membrane].
          Length = 537

 Score = 33.3 bits (76), Expect = 0.029
 Identities = 13/52 (25%), Positives = 16/52 (30%)

Query: 33  VTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEERDHP 84
           V + S    +KQD  D +KR E                 V  P  EE     
Sbjct: 486 VMMFSLIKDLKQDYADRKKRLEALMSPPRLRAGLRFKGDVAEPAMEEVAAEL 537


>gnl|CDD|33644 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 308

 Score = 29.6 bits (66), Expect = 0.44
 Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 66  ENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRN--VYGNHVSVEQKHTIDL 123
           E + S++   + +  ++ P    L E+R+ R+   LE  +    VY +++ V ++   DL
Sbjct: 4   EEIFSILPEKIRQILKEIPDRNNLEEVRI-RVNRPLEAIFPGQPVYLSYIGVTKE---DL 59

Query: 124 KPLMDRV 130
           +  ++R+
Sbjct: 60  QKTLNRL 66


>gnl|CDD|36824 KOG1611, KOG1611, KOG1611, Predicted short chain-type dehydrogenase
           [General function prediction only].
          Length = 249

 Score = 28.7 bits (64), Expect = 0.69
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 23  SLSQSCKKHGVTVVSFH-GWVKQD 45
           SLS   K   + VVS H GWV+ D
Sbjct: 184 SLSVDLKDDHILVVSIHPGWVQTD 207


>gnl|CDD|37011 KOG1800, KOG1800, KOG1800, Ferredoxin/adrenodoxin reductase
           [Nucleotide transport and metabolism].
          Length = 468

 Score = 26.9 bits (59), Expect = 2.7
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 19  SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAK 57
           S    L    +  GV VVS+  W K D +++ +     K
Sbjct: 413 SSSAGLEALLESRGVRVVSWSDWEKIDAKEVARGKGTGK 451


>gnl|CDD|146611 pfam04072, LCM, Leucine carboxyl methyltransferase.  Family of
           leucine carboxyl methyltransferases EC:2.1.1.-. This
           family may need divides a the full alignment contains a
           significantly shorter mouse sequence.
          Length = 175

 Score = 26.4 bits (59), Expect = 3.5
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 82  DHPQAIKLRELRMKRLQWELEKRYRNV 108
           D P+ I+ +   +         R R V
Sbjct: 101 DLPEVIEFKRRLLPEAGARPPARRRYV 127


>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic
           enzyme (ME), subgroup 1.  Malic enzyme (ME), a member of
           the amino acid dehydrogenase (DH)-like domain family,
           catalyzes the oxidative decarboxylation of L-malate to
           pyruvate in the presence of cations (typically  Mg++ or
           Mn++) with the concomitant reduction of cofactor NAD+ or
           NADP+.  ME has been found in all organisms, and plays
           important roles in diverse metabolic pathways such as
           photosynthesis and lipogenesis. This enzyme generally
           forms homotetramers. The conversion of malate to
           pyruvate by ME typically involves oxidation of malate to
           produce oxaloacetate, followed by decarboxylation of
           oxaloacetate to produce pyruvate and CO2.  This
           subfamily consists of eukaryotic and bacterial ME.
           Amino acid DH-like NAD(P)-binding domains are members of
           the Rossmann fold superfamily and include glutamate,
           leucine, and phenylalanine DHs, methylene
           tetrahydrofolate DH, methylene-tetrahydromethanopterin
           DH, methylene-tetrahydropholate DH/cyclohydrolase,
           Shikimate DH-like proteins, malate oxidoreductases, and
           glutamyl tRNA reductase. Amino acid DHs catalyze the
           deamination of amino acids to keto acids with NAD(P)+ as
           a cofactor. The NAD(P)-binding Rossmann fold superfamily
           includes a wide variety of protein families including
           NAD(P)- binding domains of alcohol DHs,
           tyrosine-dependent oxidoreductases,
           glyceraldehyde-3-phosphate DH, lactate/malate DHs,
           formate/glycerate DHs, siroheme synthases,
           6-phosphogluconate DH, amino acid DHs, repressor rex,
           NAD-binding potassium channel  domain, CoA-binding, and
           ornithine cyclodeaminase-like domains. These domains
           have an alpha-beta-alpha configuration. NAD binding
           involves numerous hydrogen and van der Waals contacts.
          Length = 279

 Score = 26.4 bits (59), Expect = 3.6
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 12  DNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLAS 70
           D I+++    GLS  ++ KK  + +V   G + +DR+DL    +   +   E   ++L  
Sbjct: 42  DLIVSAMVREGLSEEEARKK--IWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLE 99

Query: 71  VVEA 74
           VV+A
Sbjct: 100 VVKA 103


>gnl|CDD|34129 COG4449, COG4449, Predicted protease of the Abi (CAAX) family
           [General function prediction only].
          Length = 827

 Score = 26.6 bits (58), Expect = 3.8
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 19/50 (38%)

Query: 63  HLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNH 112
           H S +L  V+  P TEE                 LQWE+   Y  VY ++
Sbjct: 388 HFSFSLPKVIRDPFTEE-----------------LQWEIP--YYQVYAHN 418


>gnl|CDD|36479 KOG1265, KOG1265, KOG1265, Phospholipase C [Lipid transport and
            metabolism].
          Length = 1189

 Score = 26.5 bits (58), Expect = 3.8
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 51   KRYEQAKQSHMEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWEL 101
            KR  + +    E L +    V+E    EE+    +A +  E +M RL  E+
Sbjct: 1138 KRLAEKQSKRQEQLVKKHLEVLEQLAEEEKALDAEAEQEYEEQMARLPAEV 1188


>gnl|CDD|39661 KOG4460, KOG4460, KOG4460, Nuclear pore complex, Nup88/rNup84
           component [Nuclear structure, Intracellular trafficking,
           secretion, and vesicular transport].
          Length = 741

 Score = 26.2 bits (57), Expect = 4.7
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 42  VKQDREDLEKRYEQAKQSH--MEHLSENLASVVEA---PLTEEERDHPQAIKLRELRMKR 96
           +++  E L  RYE+AK+    + +  + L     +    L++ ERD  + ++L   +++ 
Sbjct: 614 LREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRH 673

Query: 97  LQWELE------KRYRNVYGNHVSVEQKHTIDLKPLMDRVQHSIQSK 137
           L   +E       + +      +S   K T  L     +   SI  +
Sbjct: 674 LGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKE 720


>gnl|CDD|33124 COG3315, COG3315, O-Methyltransferase involved in polyketide
           biosynthesis [Secondary metabolites biosynthesis,
           transport, and catabolism].
          Length = 297

 Score = 25.7 bits (56), Expect = 5.8
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 80  ERDHPQAIKLRELRMKRLQWELEKRYRNV 108
           E D P+ I+ ++  +           R V
Sbjct: 120 EVDLPEVIEFKKKLLAERGATPPAHRRLV 148


>gnl|CDD|32499 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production
           and conversion].
          Length = 910

 Score = 25.6 bits (56), Expect = 6.3
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 45  DREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEERDHPQAIKLRE---LRMKRLQWEL 101
           D E  E+ ++Q ++ +       LA      L  +     ++I LR      +  LQ EL
Sbjct: 816 DPELGERLFDQIREEYQLTRKVVLAITGHDELLADNPWLAESIALRNPYLDPLNVLQVEL 875

Query: 102 EKRYRNVYGNHVSVEQKHTIDL 123
            KR R         E +  + L
Sbjct: 876 LKRSRQSKRGDPDPEVERALLL 897


>gnl|CDD|36751 KOG1538, KOG1538, KOG1538, Uncharacterized conserved protein WDR10,
           contains WD40 repeats [General function prediction
           only].
          Length = 1081

 Score = 25.8 bits (56), Expect = 6.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 87  IKLRELRMKRLQWELEKRYRN 107
           I++R+LR   L  ELE+R + 
Sbjct: 609 IRVRDLRYLELISELEERKKR 629


>gnl|CDD|36801 KOG1588, KOG1588, KOG1588, RNA-binding protein Sam68 and related KH
           domain proteins [RNA processing and modification].
          Length = 259

 Score = 25.8 bits (56), Expect = 6.5
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 21  GLSLSQSCKKHGVTV-VSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEE 79
           G SL +  ++ G  + +   G ++   ++ E R         EHL+E L  ++E      
Sbjct: 117 GNSLKRLEEETGCKIMIRGRGSMRDKAKEEELR----GDPGYEHLNEPLHVLIETEAPPA 172

Query: 80  ERDHPQAIKLRELR 93
           E     A  L E++
Sbjct: 173 EAYARLAYALEEIK 186


>gnl|CDD|31648 COG1459, PulF, Type II secretory pathway, component PulF [Cell
           motility and secretion / Intracellular trafficking and
           secretion].
          Length = 397

 Score = 25.6 bits (56), Expect = 6.8
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 2   YAHKYTKERIDNILASFSGGLSLSQSCKKHG 32
             +   K+ + +IL     G SLS++  +  
Sbjct: 88  APNPKLKQVLTSILEELESGKSLSEALAQLP 118


>gnl|CDD|35686 KOG0465, KOG0465, KOG0465, Mitochondrial elongation factor
           [Translation, ribosomal structure and biogenesis].
          Length = 721

 Score = 25.6 bits (56), Expect = 7.2
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 47  EDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEERDHPQAIK--LRELRMKR 96
           EDLE+  E+ +Q+ +E L++   ++ E  L EEE    Q +K  +R   +KR
Sbjct: 230 EDLEELAEEKRQALIETLADVDETLAEMFLEEEEPS-AQQLKAAIRRATIKR 280


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.314    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,871,399
Number of extensions: 89085
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 58
Length of query: 162
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,405,363
Effective search space: 334807588
Effective search space used: 334807588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.5 bits)