RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781217|ref|YP_003065630.1| hypothetical protein
CLIBASIA_05620 [Candidatus Liberibacter asiaticus str. psy62]
(162 letters)
>gnl|CDD|162684 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology.
Length = 240
Score = 29.9 bits (68), Expect = 0.27
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSH 60
+ I SF L + + KK G +S ++ + +RYEQ Q
Sbjct: 177 ELITLSFDDPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEFQPD 225
>gnl|CDD|179998 PRK05294, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1066
Score = 28.5 bits (65), Expect = 0.73
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 8 KERIDNILASFSG--GLSLSQSCKKHGV 33
KER D IL + G L+L+ + GV
Sbjct: 80 KERPDAILPTMGGQTALNLAVELAESGV 107
>gnl|CDD|179979 PRK05257, PRK05257, malate:quinone oxidoreductase; Validated.
Length = 494
Score = 28.6 bits (65), Expect = 0.73
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 36 VSFHGWVKQDREDLEKRYEQAKQSH----MEHLSENLASVVE-APLTEEERDHPQAI 87
+SF W + + L+KRYE K + ME SE+ A + E APL E RD Q +
Sbjct: 115 MSF-VWGEDNVAFLKKRYEALKANPLFAGMEF-SEDPAQIKEWAPLMMEGRDPSQKV 169
>gnl|CDD|181833 PRK09413, PRK09413, IS2 repressor TnpA; Reviewed.
Length = 121
Score = 28.6 bits (63), Expect = 0.73
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDRE 47
+ T+E+I + SF G+++S ++HGV W KQ +E
Sbjct: 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQE 55
>gnl|CDD|177791 PLN00200, PLN00200, argininosuccinate synthase; Provisional.
Length = 404
Score = 28.2 bits (63), Expect = 0.94
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 14 ILASFSGGLSLS----QSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQS 59
++ ++SGGL S + +G VV F V Q E+LE +AK S
Sbjct: 8 VVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQGIEELEGLEAKAKAS 57
>gnl|CDD|178444 PLN02852, PLN02852, ferredoxin-NADP+ reductase.
Length = 491
Score = 27.4 bits (61), Expect = 1.7
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 23 SLSQSCKKHGVTVVSFHGWVKQDREDLEKR 52
L + + GV VV F GW K D EK
Sbjct: 439 GLLELLESRGVRVVPFSGWEKIDSA--EKE 466
>gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
subunit. In several thermophilic species
(Methanobacterium thermoautotrophicum, Methanococcus
jannaschii, Aquifex aeolicus), the large subunit appears
split, at different points, into two separate genes.
Length = 1050
Score = 27.3 bits (61), Expect = 1.9
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 8 KERIDNILASFSG------GLSLSQS--CKKHGVTVVSFHGWVKQDREDLEKRYEQAKQS 59
KER D IL +F G + L +S +K+GV V+ + ED E E K+
Sbjct: 79 KERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEI 138
Query: 60 HME 62
Sbjct: 139 GEP 141
>gnl|CDD|185096 PRK15174, PRK15174, Vi polysaccharide export protein VexE;
Provisional.
Length = 656
Score = 26.6 bits (58), Expect = 3.4
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 44 QDREDLEKRYEQAKQSHM-EHLSENLASVVE----APLTEEERDHPQAIKLRELRMKRLQ 98
+ E + + Y QA+ SH+ + E L ++ L E D + R+ ++R +
Sbjct: 369 SEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSGIERDE 428
Query: 99 WELEKRY 105
WE ++
Sbjct: 429 WERRAKW 435
>gnl|CDD|182206 PRK10044, PRK10044, ferrichrome outer membrane transporter;
Provisional.
Length = 727
Score = 25.9 bits (57), Expect = 4.5
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 100 ELEKRYRNVYGNHVSVEQKHTIDLKPLMDR-------VQHSIQSK 137
E + R+VYG V ++ H ++ ++D V +QSK
Sbjct: 337 ENKTSQRSVYGYGVCSDKGHYLNRGYVVDDEKLQNFSVDTQLQSK 381
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome].
Length = 555
Score = 25.7 bits (56), Expect = 5.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 48 DLEKRYEQAKQSHMEHLSENLASVVEAPLTEEE 80
D ++RY K + H + N+ VV P +EEE
Sbjct: 113 DYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEE 145
>gnl|CDD|180558 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 25.9 bits (58), Expect = 5.4
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 9 ERIDNILASFSGGLSLSQSCKKHGVTVVSFHGW--------VKQDREDLEKRYEQAK 57
E + ++ +GG+ KK+ V ++ G V+ ED E+ Y AK
Sbjct: 85 EWKNGVVNRLTGGVEGL--LKKNKVDII--RGEAKLVDPNTVRVMTEDGEQTY-TAK 136
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 25.7 bits (56), Expect = 5.4
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 38 FHGWVKQDREDLEKRY------EQAKQ----SHMEHLSENLASVVEAPLTEEERDHPQAI 87
F G +Q RE+ R+ E+A Q SH + A P E E
Sbjct: 1286 FAGGAQQKRENANLRHPCSGPTEKAGQTPQASHTCSPGQPAAHPEGQPPPEPEDPGVPLN 1345
Query: 88 KLRELRMKRLQWELEKRYRNVYGNH 112
L ++ +Q L KR+++ +H
Sbjct: 1346 TGARLILQHVQALLVKRFQHTIRSH 1370
>gnl|CDD|180670 PRK06722, PRK06722, exonuclease; Provisional.
Length = 281
Score = 25.8 bits (56), Expect = 5.5
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 24 LSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEERDH 83
LS C H V K+ R DL+K QA + EH ++V + L E + H
Sbjct: 105 LSHDCTLHSVECPCME---KERRIDLQKFVFQAYEELFEHTPSLQSAVEQLGLIWEGKQH 161
>gnl|CDD|183073 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 25.6 bits (57), Expect = 6.2
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 42 VKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWEL 101
K++ E L+++ QA + L ++ + E L L +++L+ L
Sbjct: 78 QKEETEQLKQQLAQAPAK-LRQAQAELEALKDDNDEETRET------LSTLSLRQLESRL 130
Query: 102 EKR 104
+
Sbjct: 131 AQT 133
>gnl|CDD|161769 TIGR00216, ispH_lytB, (E)-4-hydroxy-3-methyl-but-2-enyl
pyrophosphate reductase (IPP and DMAPP forming).
Escherichia coli LytB protein had been found to
regulate the activity of RelA (guanosine
3',5'-bispyrophosphate synthetase I), which in turn
controls the level of a regulatory metabolite. It is
involved in penicillin tolerance and the stringent
response.
Length = 280
Score = 25.4 bits (56), Expect = 7.5
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 22 LSLSQSCKKHGVTVVSFHGWVKQDREDLEKR 52
L ++ HG + RE+LEK+
Sbjct: 57 LEDLDEVAAGDTVIIRAHGVPPEVREELEKK 87
>gnl|CDD|149431 pfam08366, LLGL, LLGL2. This domain is found in lethal giant
larvae homolog 2 (LLGL2) proteins and syntaxin-binding
proteins like tomosyn. It has been identified in
eukaryotes and tends to be found together with WD
repeats (pfam00400).
Length = 105
Score = 25.4 bits (56), Expect = 7.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 18 FSGGLSLSQSCKKHGVTVV 36
FSGG+ + +H +TV+
Sbjct: 33 FSGGMPRASYGDRHCITVM 51
>gnl|CDD|129409 TIGR00309, V_ATPase_subD, H(+)-transporting ATP synthase, vacuolar
type, subunit D. Although this ATPase can run
backwards, using a proton gradient to synthesize ATP,
the primary biological role is to acidify some
compartment, such as yeast vacuole (a lysosomal homolog)
or the interior of a prokaryote.
Length = 209
Score = 25.2 bits (55), Expect = 7.9
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 48 DLEKRYEQAKQSHMEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRN 107
+ +R + K + L E ++ ++EA + P A+ + L + ++E++ + +N
Sbjct: 41 QILERAKDIKNKMEQKLKEAISDLIEA----QSVMGPFAVWIAALSVVTARFEVDMKSKN 96
Query: 108 VYGNHVSVEQKHTIDLKP 125
+ G V V + I K
Sbjct: 97 IMGVVVPVFDSYEIRRKV 114
>gnl|CDD|152883 pfam12449, DUF3684, Protein of unknown function (DUF3684). This
domain family is found in eukaryotes, and is typically
between 1072 and 1090 amino acids in length.
Length = 1082
Score = 25.4 bits (56), Expect = 8.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 65 SENLASVVE--APLTEEERDHPQAIKLRELRMKRL 97
S L+S+VE A + D A+KLR+L ++R
Sbjct: 1043 SPPLSSLVEEEARIGAVASDQRPAVKLRKLILERS 1077
>gnl|CDD|114743 pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo). This family
consists of several bacterial Malate:quinone
oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes
part in the citric acid cycle. It oxidizes L-malate to
oxaloacetate and donates electrons to ubiquinone-1 and
other artificial acceptors or, via the electron transfer
chain, to oxygen. NAD is not an acceptor and the natural
direct acceptor for the enzyme is most likely a quinone.
The enzyme is therefore called malate:quinone
oxidoreductase, abbreviated to Mqo. Mqo is a peripheral
membrane protein and can be released from the membrane
by addition of chelators.
Length = 489
Score = 25.3 bits (56), Expect = 8.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 49 LEKRYEQAKQSH----MEHLSENLASVVE-APLTEEERDHPQAI 87
L+KRYE KQ+ ME SE+ + E PL E RD + I
Sbjct: 126 LKKRYEALKQNPLFEGME-YSEDPEKIKEWVPLMMEGRDPDEPI 168
>gnl|CDD|177902 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme.
Length = 668
Score = 25.1 bits (55), Expect = 9.0
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 10 RIDNILASFSGGLSLSQSCKKHGVTVVSF 38
+++ I A+ G L+L+ C+++G+ +++F
Sbjct: 451 KVETIRANVVGTLTLADVCRENGLLMMNF 479
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.314 0.129 0.370
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,556,268
Number of extensions: 150233
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 45
Length of query: 162
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,136,185
Effective search space: 314350060
Effective search space used: 314350060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.3 bits)