RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781217|ref|YP_003065630.1| hypothetical protein
CLIBASIA_05620 [Candidatus Liberibacter asiaticus str. psy62]
(162 letters)
>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1
octameric assembly, GP1 channel, DNA recognition, DNA
packaging; 1.65A {Enterobacteria phage SF6}
Length = 143
Score = 63.8 bits (155), Expect = 2e-11
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVS-FHGWVKQDREDLEKRYEQAKQSHMEH 63
Y E D+I + S G SL + CK+ G+ S W+ + ED +Y +A ++ +
Sbjct: 15 DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKH-EDFRDKYAKATEARADS 73
Query: 64 LSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQK 118
+ E + + + + + + LR+ +W L + YG+ V+ E
Sbjct: 74 IFEEIFEIADNAIPDAA-----EVAKARLRVDTRKWALARMNPRKYGDKVTNELV 123
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Length = 101
Score = 33.2 bits (76), Expect = 0.031
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 8 KERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKR 52
+I + G ++L+++ + +G++ F+ WV E +
Sbjct: 37 SRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGKDA 81
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto
reductase family 7, SSA reductase, TIM barrel; HET: FLC
NDP; 2.4A {Homo sapiens}
Length = 360
Score = 31.5 bits (70), Expect = 0.088
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 59 SHMEHLSENLASVVEAPLTEEERD 82
S +E L +NLA+ E PL D
Sbjct: 319 SSLEQLEQNLAATEEGPLEPAVVD 342
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure,
structural genomics, protein structure initiative; NMR
{Corynebacterium glutamicum} SCOP: a.4.1.19
Length = 97
Score = 31.4 bits (71), Expect = 0.10
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 1 MYAHKYTKERIDNI--LASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQ 58
M Y++E + L S G SL Q G+ V+ W+ + + +
Sbjct: 1 MPTKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSA 60
Query: 59 SHME 62
+ E
Sbjct: 61 AVSE 64
>1gve_A Aflatoxin B1 aldehyde reductase; oxidoreductase, aldo-keto
reductase, succinic semialdehyde oxidoreductase, AKR7
family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP:
c.1.7.1 PDB: 1gve_B* 2clp_A* 2c91_A*
Length = 327
Score = 30.0 bits (66), Expect = 0.29
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 59 SHMEHLSENLASVVEAPLTEEERD 82
S +E L +NLA V E PL D
Sbjct: 286 SSLEQLEQNLALVEEGPLEPAVVD 309
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target
RHR5, structural genomics, protein structure
initiative; NMR {Rhodobacter sphaeroides}
Length = 95
Score = 29.7 bits (67), Expect = 0.35
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 8 KERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKR 52
+ + A G ++ ++ ++ ++ F W EK
Sbjct: 36 SRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAAHGEKA 80
>3erp_A Putative oxidoreductase; funded by the national institute of
allergy and infectious diseases of NIH contract number
HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Length = 353
Score = 29.5 bits (65), Expect = 0.37
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 59 SHMEHLSENLASVVEAPLTEEERDHPQAI 87
S + + + + + E AI
Sbjct: 320 SKPSQIEDAVGMLANRRFSAAECAEIDAI 348
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC;
1.25A {Bacillus halodurans c-125} PDB: 1ynq_A*
Length = 317
Score = 28.8 bits (63), Expect = 0.62
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 59 SHMEHLSENLASVVEAPLTEEERD 82
S ++ + N+ +V PLT EER
Sbjct: 278 SSIDQVKANVQAVEATPLTAEERQ 301
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Drosophila melanogaster}
Length = 87
Score = 28.7 bits (64), Expect = 0.67
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDRE 47
T + + G S + + GV + GW K + +
Sbjct: 22 SLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDK 64
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
acetylation; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 28.4 bits (63), Expect = 0.87
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 59 SHMEHLSENLASV-VEAPLTEEERD 82
S+ E L EN+ ++ V L+
Sbjct: 325 SNAEQLMENIGAIQVLPKLSSSIVH 349
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.4 bits (62), Expect = 0.92
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 6/28 (21%)
Query: 76 LTEEERDHPQAI-KLRELRMKRLQWELE 102
LT+E P++I K RE + KRLQ EL+
Sbjct: 80 LTQE----PESIRKWREEQRKRLQ-ELD 102
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (61), Expect = 1.0
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 38/117 (32%)
Query: 7 TKERIDN--ILASFSGGLSLSQSCKKHGVTVVS---FHGW------------VKQDREDL 49
TKE +D+ + A + + L S G+ ++ F+G+ V++D E
Sbjct: 881 TKEPVDDKDVKAKYETSI-LEHS----GIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPF 935
Query: 50 EKRYEQAKQSHMEHLSENLASVVEAPLTEEERDHPQAIKL---------RELRMKRL 97
E E A+Q +H + + E P T E ++KL + LR RL
Sbjct: 936 EASKETAEQ--FKHQHGDKVDIFEIPETGE-----YSVKLLKGATLYIPKALRFDRL 985
Score = 25.2 bits (54), Expect = 7.2
Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 28/102 (27%)
Query: 9 ERIDNILASFSGGLSLSQSCKKHGVTVVS--------------------FHGWVKQDR-- 46
+ +D IL F L S++ K GV VS +G + +DR
Sbjct: 1413 DNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIVVHPDYLYGAITEDRYN 1472
Query: 47 EDLEKRYEQAKQS----HMEHLSENL-ASVVEAPLTEE-ERD 82
E + K + K + H + L S AP T+E E D
Sbjct: 1473 EYVAKVSAREKSAYKFFHNGMIYNKLFVSKEHAPYTDELEED 1514
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR,
AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans}
Length = 348
Score = 28.1 bits (62), Expect = 1.1
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 59 SHMEHLSENLASVVEAPLTEEERD 82
+S V LT+EE+
Sbjct: 301 RKPGQVSGVKD-VFGWSLTDEEKK 323
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.3 bits (59), Expect = 1.6
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 19/49 (38%)
Query: 80 ERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHTIDLKPLMD 128
E+ QA +K+LQ L+ +Y + + + +K M+
Sbjct: 18 EK---QA-------LKKLQASLK-----LYAD----DSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 27.2 bits (60), Expect = 1.7
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 20/109 (18%)
Query: 2 YAHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVS-FHGWVKQ---DR--EDLEKRYEQ 55
A K D S +L ++ + +V+ F G Q D E+L Y Q
Sbjct: 128 TARIMAKRPFDKKSNS-----ALFRAVGEGNAQLVAIFGG---QGNTDDYFEELRDLY-Q 178
Query: 56 AKQSHMEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKR 104
+ L + A L+E R A K+ + L+W LE
Sbjct: 179 TYHVLVGDLIKFSAET----LSELIRTTLDAEKVFTQGLNILEW-LENP 222
>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus}
SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X*
1ezv_X* 3cxh_J*
Length = 127
Score = 26.9 bits (60), Expect = 2.3
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 20 GGL-----SLSQSCKKHGVTVVSFH--GWVKQ 44
GL SLS +C G ++ S + W++
Sbjct: 9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRL 40
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative
formyltetrahydrofolate synthetase, structural genomics;
HET: MSE; 1.85A {Thermotoga maritima}
Length = 543
Score = 26.7 bits (59), Expect = 2.4
Identities = 14/114 (12%), Positives = 39/114 (34%), Gaps = 14/114 (12%)
Query: 6 YTKERIDNILASFSGGLSLSQSCKKHGV-TVVSFHGWVKQDREDLEKRYEQAKQSHMEHL 64
+E ++ + F ++ +K + VV+ + + +++ ++ ++ +
Sbjct: 334 IHEENLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVRV- 392
Query: 65 SENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQK 118
+V E E A + E + +Y + VE+K
Sbjct: 393 -----AVSEVFKKGSEGGVELAKAVAEAAK-------DVEPAYLYEMNDPVEKK 434
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone,
NADPH, cytoplasm, ION transport, ionic channel, NADP,
phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus}
SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 1exb_A* 3eb4_A*
3eb3_A* 1qrq_A* 1zsx_A*
Length = 327
Score = 26.6 bits (57), Expect = 2.9
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 59 SHMEHLSENLASV-VEAPLTEEERD 82
S+ E L EN+ ++ V L+
Sbjct: 291 SNAEQLMENIGAIQVLPKLSSSIVH 315
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography;
1.80A {Brucella melitensis biovar}
Length = 283
Score = 26.3 bits (58), Expect = 3.2
Identities = 4/24 (16%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 59 SHMEHLSENLASVVEAPLTEEERD 82
+ EN + + L + D
Sbjct: 255 ITPARIKENFD-IFDFTLNGTDHD 277
>2h6f_B Protein farnesyltransferase beta subunit; ftase,
farnesyltransferase, farnesyl transferase,
prenyltransferase, CAAX, RAS, lipid modification,
prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP:
a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B*
1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B*
2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3e33_B* 1d8e_B*
1fpp_B* ...
Length = 437
Score = 26.5 bits (58), Expect = 3.2
Identities = 5/38 (13%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 95 KRLQWELEKRYRNVYGNHVSVEQKHTIDLKPLMDRVQH 132
Q ++E++ + V+ ++ + ++ R +H
Sbjct: 45 SIEQAKVEEKIQEVFSSYKFNHL----VPRLVLQREKH 78
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance,
oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Length = 331
Score = 25.9 bits (56), Expect = 3.8
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 57 KQSHMEHLSENLASVVEAPLTEEERDHPQAI-KLRELRMKRLQWELEKRYRNVY 109
K S L ENL V + + E+ I + + R E Y+ +
Sbjct: 272 KSSSGARLKENLD-VFDWSIPEDLFTKFSNIPQEKFCRATEFAHETHGFYKTIE 324
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint
center structural genomics, JCSG, protein structure
initiative; 2.54A {Pseudomonas syringae PV}
Length = 262
Score = 25.9 bits (56), Expect = 4.0
Identities = 11/77 (14%), Positives = 24/77 (31%)
Query: 24 LSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEERDH 83
S GV +F ++ K + Q +H E + ++V + + +
Sbjct: 166 WSAVVCSTGVYAEAFAEETRKKSMKWLKMHAQYDDAHPWEALEIICTLVGNKPSLQLQAE 225
Query: 84 PQAIKLRELRMKRLQWE 100
+ + L E
Sbjct: 226 LRQAVTKSYDYMYLFLE 242
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 25.7 bits (56), Expect = 4.4
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 60 HMEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVY 109
+E +E L + L E A EL + E ++ +
Sbjct: 376 ALEQDAECLKAG----LGEAFIRAAVAAAKYELENEETDAEGN-KFLEYF 420
>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university
of washington, NIH, niaid, oxidoreductase, structural
genomics; HET: NAP; 1.75A {Giardia lamblia atcc 50803}
Length = 334
Score = 25.7 bits (55), Expect = 5.1
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 57 KQSHMEHLSENLASVVEAPLTEEERD 82
K + N E L++++ D
Sbjct: 284 KSQTPARIEANFK-CTEVQLSDDDMD 308
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase; HET: FAD; 1.70A {Bos taurus} SCOP:
c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A*
1e6e_A*
Length = 460
Score = 25.5 bits (55), Expect = 5.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 29 KKHGVTVVSFHGWVKQDREDLEK 51
GV VSF W K D E++ +
Sbjct: 415 DSRGVWPVSFSDWEKLDAEEVSR 437
>3cei_A Superoxide dismutase; oxidoreductase; 2.40A {Helicobacter pylori}
Length = 213
Score = 25.5 bits (56), Expect = 6.0
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 47 EDLEKRYEQAKQSHMEHLSENLASVVEAPL 76
+ + YE AK+ + + + +V L
Sbjct: 184 HFVSQCYEWAKKEGLGSVDYYINELVHKKL 213
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.70A {Porphyromonas gingivalis W83}
Length = 506
Score = 25.4 bits (55), Expect = 6.7
Identities = 3/25 (12%), Positives = 7/25 (28%)
Query: 46 REDLEKRYEQAKQSHMEHLSENLAS 70
R L + E + + +
Sbjct: 453 RPLLRQYLELGVKGQTPQNLDCCFA 477
>3p0c_A Nischarin; structural genomics, structural genomics consortium,
SGC, PX signaling protein; 2.27A {Homo sapiens}
Length = 130
Score = 25.4 bits (55), Expect = 7.0
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 91 ELRMKRLQWELEKRYRNVYGNHVSVEQKHTIDLKPLMDRVQHSIQ 135
++ +W ++ RY + + H + + ID L +
Sbjct: 42 QVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKIIGKN 86
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium; HET: FAD ODP; 1.05A {Mycobacterium
tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 24.9 bits (53), Expect = 8.7
Identities = 5/44 (11%), Positives = 11/44 (25%)
Query: 8 KERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51
KE + ++ +V+ W D +
Sbjct: 390 KEGAECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAA 433
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.314 0.129 0.370
Gapped
Lambda K H
0.267 0.0555 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,340,745
Number of extensions: 58493
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 58
Length of query: 162
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 77
Effective length of database: 3,632,490
Effective search space: 279701730
Effective search space used: 279701730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.6 bits)