RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter asiaticus str. psy62] (162 letters) >3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} Length = 143 Score = 63.8 bits (155), Expect = 2e-11 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVS-FHGWVKQDREDLEKRYEQAKQSHMEH 63 Y E D+I + S G SL + CK+ G+ S W+ + ED +Y +A ++ + Sbjct: 15 DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKH-EDFRDKYAKATEARADS 73 Query: 64 LSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQK 118 + E + + + + + + LR+ +W L + YG+ V+ E Sbjct: 74 IFEEIFEIADNAIPDAA-----EVAKARLRVDTRKWALARMNPRKYGDKVTNELV 123 >2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3 Length = 101 Score = 33.2 bits (76), Expect = 0.031 Identities = 8/45 (17%), Positives = 21/45 (46%) Query: 8 KERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKR 52 +I + G ++L+++ + +G++ F+ WV E + Sbjct: 37 SRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGKDA 81 >2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, TIM barrel; HET: FLC NDP; 2.4A {Homo sapiens} Length = 360 Score = 31.5 bits (70), Expect = 0.088 Identities = 10/24 (41%), Positives = 13/24 (54%) Query: 59 SHMEHLSENLASVVEAPLTEEERD 82 S +E L +NLA+ E PL D Sbjct: 319 SSLEQLEQNLAATEEGPLEPAVVD 342 >2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19 Length = 97 Score = 31.4 bits (71), Expect = 0.10 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 1 MYAHKYTKERIDNI--LASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQ 58 M Y++E + L S G SL Q G+ V+ W+ + + + Sbjct: 1 MPTKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSA 60 Query: 59 SHME 62 + E Sbjct: 61 AVSE 64 >1gve_A Aflatoxin B1 aldehyde reductase; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 1gve_B* 2clp_A* 2c91_A* Length = 327 Score = 30.0 bits (66), Expect = 0.29 Identities = 11/24 (45%), Positives = 13/24 (54%) Query: 59 SHMEHLSENLASVVEAPLTEEERD 82 S +E L +NLA V E PL D Sbjct: 286 SSLEQLEQNLALVEEGPLEPAVVD 309 >2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides} Length = 95 Score = 29.7 bits (67), Expect = 0.35 Identities = 6/45 (13%), Positives = 16/45 (35%) Query: 8 KERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKR 52 + + A G ++ ++ ++ ++ F W EK Sbjct: 36 SRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAAHGEKA 80 >3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious diseases of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp} Length = 353 Score = 29.5 bits (65), Expect = 0.37 Identities = 4/29 (13%), Positives = 9/29 (31%) Query: 59 SHMEHLSENLASVVEAPLTEEERDHPQAI 87 S + + + + + E AI Sbjct: 320 SKPSQIEDAVGMLANRRFSAAECAEIDAI 348 >1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans c-125} PDB: 1ynq_A* Length = 317 Score = 28.8 bits (63), Expect = 0.62 Identities = 9/24 (37%), Positives = 14/24 (58%) Query: 59 SHMEHLSENLASVVEAPLTEEERD 82 S ++ + N+ +V PLT EER Sbjct: 278 SSIDQVKANVQAVEATPLTAEERQ 301 >2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} Length = 87 Score = 28.7 bits (64), Expect = 0.67 Identities = 8/43 (18%), Positives = 15/43 (34%) Query: 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDRE 47 T + + G S + + GV + GW K + + Sbjct: 22 SLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDK 64 >3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, acetylation; HET: NAP; 2.90A {Rattus norvegicus} Length = 367 Score = 28.4 bits (63), Expect = 0.87 Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%) Query: 59 SHMEHLSENLASV-VEAPLTEEERD 82 S+ E L EN+ ++ V L+ Sbjct: 325 SNAEQLMENIGAIQVLPKLSSSIVH 349 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 28.4 bits (62), Expect = 0.92 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 6/28 (21%) Query: 76 LTEEERDHPQAI-KLRELRMKRLQWELE 102 LT+E P++I K RE + KRLQ EL+ Sbjct: 80 LTQE----PESIRKWREEQRKRLQ-ELD 102 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 27.9 bits (61), Expect = 1.0 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 38/117 (32%) Query: 7 TKERIDN--ILASFSGGLSLSQSCKKHGVTVVS---FHGW------------VKQDREDL 49 TKE +D+ + A + + L S G+ ++ F+G+ V++D E Sbjct: 881 TKEPVDDKDVKAKYETSI-LEHS----GIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPF 935 Query: 50 EKRYEQAKQSHMEHLSENLASVVEAPLTEEERDHPQAIKL---------RELRMKRL 97 E E A+Q +H + + E P T E ++KL + LR RL Sbjct: 936 EASKETAEQ--FKHQHGDKVDIFEIPETGE-----YSVKLLKGATLYIPKALRFDRL 985 Score = 25.2 bits (54), Expect = 7.2 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 28/102 (27%) Query: 9 ERIDNILASFSGGLSLSQSCKKHGVTVVS--------------------FHGWVKQDR-- 46 + +D IL F L S++ K GV VS +G + +DR Sbjct: 1413 DNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIVVHPDYLYGAITEDRYN 1472 Query: 47 EDLEKRYEQAKQS----HMEHLSENL-ASVVEAPLTEE-ERD 82 E + K + K + H + L S AP T+E E D Sbjct: 1473 EYVAKVSAREKSAYKFFHNGMIYNKLFVSKEHAPYTDELEED 1514 >3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} Length = 348 Score = 28.1 bits (62), Expect = 1.1 Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 1/24 (4%) Query: 59 SHMEHLSENLASVVEAPLTEEERD 82 +S V LT+EE+ Sbjct: 301 RKPGQVSGVKD-VFGWSLTDEEKK 323 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 27.3 bits (59), Expect = 1.6 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 19/49 (38%) Query: 80 ERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHTIDLKPLMD 128 E+ QA +K+LQ L+ +Y + + + +K M+ Sbjct: 18 EK---QA-------LKKLQASLK-----LYAD----DSAPALAIKATME 47 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 27.2 bits (60), Expect = 1.7 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 20/109 (18%) Query: 2 YAHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVS-FHGWVKQ---DR--EDLEKRYEQ 55 A K D S +L ++ + +V+ F G Q D E+L Y Q Sbjct: 128 TARIMAKRPFDKKSNS-----ALFRAVGEGNAQLVAIFGG---QGNTDDYFEELRDLY-Q 178 Query: 56 AKQSHMEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKR 104 + L + A L+E R A K+ + L+W LE Sbjct: 179 TYHVLVGDLIKFSAET----LSELIRTTLDAEKVFTQGLNILEW-LENP 222 >3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J* Length = 127 Score = 26.9 bits (60), Expect = 2.3 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 7/32 (21%) Query: 20 GGL-----SLSQSCKKHGVTVVSFH--GWVKQ 44 GL SLS +C G ++ S + W++ Sbjct: 9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRL 40 >3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} Length = 543 Score = 26.7 bits (59), Expect = 2.4 Identities = 14/114 (12%), Positives = 39/114 (34%), Gaps = 14/114 (12%) Query: 6 YTKERIDNILASFSGGLSLSQSCKKHGV-TVVSFHGWVKQDREDLEKRYEQAKQSHMEHL 64 +E ++ + F ++ +K + VV+ + + +++ ++ ++ + Sbjct: 334 IHEENLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVRV- 392 Query: 65 SENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQK 118 +V E E A + E + +Y + VE+K Sbjct: 393 -----AVSEVFKKGSEGGVELAKAVAEAAK-------DVEPAYLYEMNDPVEKK 434 >3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A* Length = 327 Score = 26.6 bits (57), Expect = 2.9 Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%) Query: 59 SHMEHLSENLASV-VEAPLTEEERD 82 S+ E L EN+ ++ V L+ Sbjct: 291 SNAEQLMENIGAIQVLPKLSSSIVH 315 >3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar} Length = 283 Score = 26.3 bits (58), Expect = 3.2 Identities = 4/24 (16%), Positives = 8/24 (33%), Gaps = 1/24 (4%) Query: 59 SHMEHLSENLASVVEAPLTEEERD 82 + EN + + L + D Sbjct: 255 ITPARIKENFD-IFDFTLNGTDHD 277 >2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3e33_B* 1d8e_B* 1fpp_B* ... Length = 437 Score = 26.5 bits (58), Expect = 3.2 Identities = 5/38 (13%), Positives = 17/38 (44%), Gaps = 4/38 (10%) Query: 95 KRLQWELEKRYRNVYGNHVSVEQKHTIDLKPLMDRVQH 132 Q ++E++ + V+ ++ + ++ R +H Sbjct: 45 SIEQAKVEEKIQEVFSSYKFNHL----VPRLVLQREKH 78 >3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana} Length = 331 Score = 25.9 bits (56), Expect = 3.8 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%) Query: 57 KQSHMEHLSENLASVVEAPLTEEERDHPQAI-KLRELRMKRLQWELEKRYRNVY 109 K S L ENL V + + E+ I + + R E Y+ + Sbjct: 272 KSSSGARLKENLD-VFDWSIPEDLFTKFSNIPQEKFCRATEFAHETHGFYKTIE 324 >3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV} Length = 262 Score = 25.9 bits (56), Expect = 4.0 Identities = 11/77 (14%), Positives = 24/77 (31%) Query: 24 LSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEERDH 83 S GV +F ++ K + Q +H E + ++V + + + Sbjct: 166 WSAVVCSTGVYAEAFAEETRKKSMKWLKMHAQYDDAHPWEALEIICTLVGNKPSLQLQAE 225 Query: 84 PQAIKLRELRMKRLQWE 100 + + L E Sbjct: 226 LRQAVTKSYDYMYLFLE 242 >2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Length = 421 Score = 25.7 bits (56), Expect = 4.4 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 5/50 (10%) Query: 60 HMEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVY 109 +E +E L + L E A EL + E ++ + Sbjct: 376 ALEQDAECLKAG----LGEAFIRAAVAAAKYELENEETDAEGN-KFLEYF 420 >3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university of washington, NIH, niaid, oxidoreductase, structural genomics; HET: NAP; 1.75A {Giardia lamblia atcc 50803} Length = 334 Score = 25.7 bits (55), Expect = 5.1 Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 1/26 (3%) Query: 57 KQSHMEHLSENLASVVEAPLTEEERD 82 K + N E L++++ D Sbjct: 284 KSQTPARIEANFK-CTEVQLSDDDMD 308 >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Length = 460 Score = 25.5 bits (55), Expect = 5.5 Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 29 KKHGVTVVSFHGWVKQDREDLEK 51 GV VSF W K D E++ + Sbjct: 415 DSRGVWPVSFSDWEKLDAEEVSR 437 >3cei_A Superoxide dismutase; oxidoreductase; 2.40A {Helicobacter pylori} Length = 213 Score = 25.5 bits (56), Expect = 6.0 Identities = 6/30 (20%), Positives = 13/30 (43%) Query: 47 EDLEKRYEQAKQSHMEHLSENLASVVEAPL 76 + + YE AK+ + + + +V L Sbjct: 184 HFVSQCYEWAKKEGLGSVDYYINELVHKKL 213 >2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Porphyromonas gingivalis W83} Length = 506 Score = 25.4 bits (55), Expect = 6.7 Identities = 3/25 (12%), Positives = 7/25 (28%) Query: 46 REDLEKRYEQAKQSHMEHLSENLAS 70 R L + E + + + Sbjct: 453 RPLLRQYLELGVKGQTPQNLDCCFA 477 >3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Length = 130 Score = 25.4 bits (55), Expect = 7.0 Identities = 7/45 (15%), Positives = 17/45 (37%) Query: 91 ELRMKRLQWELEKRYRNVYGNHVSVEQKHTIDLKPLMDRVQHSIQ 135 ++ +W ++ RY + + H + + ID L + Sbjct: 42 QVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKIIGKN 86 >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456 Score = 24.9 bits (53), Expect = 8.7 Identities = 5/44 (11%), Positives = 11/44 (25%) Query: 8 KERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 KE + ++ +V+ W D + Sbjct: 390 KEGAECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAA 433 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.314 0.129 0.370 Gapped Lambda K H 0.267 0.0555 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,340,745 Number of extensions: 58493 Number of successful extensions: 259 Number of sequences better than 10.0: 1 Number of HSP's gapped: 257 Number of HSP's successfully gapped: 58 Length of query: 162 Length of database: 5,693,230 Length adjustment: 85 Effective length of query: 77 Effective length of database: 3,632,490 Effective search space: 279701730 Effective search space used: 279701730 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 53 (24.6 bits)