RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781217|ref|YP_003065630.1| hypothetical protein
CLIBASIA_05620 [Candidatus Liberibacter asiaticus str. psy62]
         (162 letters)



>d1gvea_ c.1.7.1 (A:) Aflatoxin aldehyde reductase (akr7a1) {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 324

 Score = 32.0 bits (71), Expect = 0.028
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 59  SHMEHLSENLASVVEAPLTEEERD 82
           S +E L +NLA V E PL     D
Sbjct: 283 SSLEQLEQNLALVEEGPLEPAVVD 306


>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762
          {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 89

 Score = 31.8 bits (72), Expect = 0.030
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 1  MYAHKYTKERIDNI--LASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQ 58
          M    Y++E   +   L   S G SL Q     G+  V+   W+ +   +   +      
Sbjct: 1  MPTKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSA 60

Query: 59 SHME 62
          +  E
Sbjct: 61 AVSE 64


>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678
          {Silicibacter pomeroyi [TaxId: 89184]}
          Length = 93

 Score = 30.8 bits (70), Expect = 0.060
 Identities = 8/45 (17%), Positives = 21/45 (46%)

Query: 8  KERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKR 52
            +I  +     G ++L+++ + +G++   F+ WV    E  +  
Sbjct: 37 SRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGKDA 81


>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
           protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
          Length = 321

 Score = 30.8 bits (68), Expect = 0.067
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 38  FHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRL 97
           F   + Q   +++K +E      +E L + L     A   E+       I  +E   K  
Sbjct: 3   FSQELTQREANVKKVHEN-----LEELQKKLDHTSFA-HKEDRDRLEAQIAQKEQEQKAK 56

Query: 98  QWELEKRYRNVYGNHVSVEQKHTIDLKPLMDRVQ 131
             E +++ +N +      E++            Q
Sbjct: 57  LAEYDQKVQNEFDARERAEREREAARGDAAAEKQ 90


>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal
           domain {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 241

 Score = 28.9 bits (64), Expect = 0.22
 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 28  CKKHGVTVVSFHGWVKQDREDLEKR--YEQAKQSHMEHLSENLASVVEAPLTEEERDHPQ 85
            K     V S    V     +L K+   E+ +   +E++ +    + E   +EEE    +
Sbjct: 167 DKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPEMTEYVFSEEEL--AE 224

Query: 86  AIKLRELRMKRLQW 99
             ++++ +     W
Sbjct: 225 INRIKDTKFGTWDW 238


>d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]}
          Length = 346

 Score = 26.8 bits (58), Expect = 0.97
 Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 15/49 (30%)

Query: 59  SHMEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRN 107
           + M+ L  N+ S +   L+E+              +  ++  + + Y  
Sbjct: 310 TTMDQLKTNIES-LHLELSEDV-------------LAEIE-AVHQVYTY 343


>d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta
           subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 326

 Score = 26.1 bits (56), Expect = 1.4
 Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 59  SHMEHLSENLASV-VEAPLTEEERD 82
           S+ E L EN+ ++ V   L+     
Sbjct: 290 SNAEQLMENIGAIQVLPKLSSSIVH 314


>d1pyfa_ c.1.7.1 (A:) Putative oxidoreductase IolS {Bacillus
           subtilis [TaxId: 1423]}
          Length = 311

 Score = 25.7 bits (55), Expect = 2.1
 Identities = 4/26 (15%), Positives = 12/26 (46%), Gaps = 1/26 (3%)

Query: 57  KQSHMEHLSENLASVVEAPLTEEERD 82
                + L +N+ +  +  L++E+  
Sbjct: 278 GAKRADQLIDNIKT-ADVTLSQEDIS 302


>d1dc1a_ c.52.1.11 (A:) Restriction endonuclease BsobI {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 319

 Score = 24.5 bits (53), Expect = 4.4
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 91  ELRMKRLQWELEKRYRN-VYGNHVSVEQKHTIDLKPLMDRVQHSIQSKGLK 140
           E   K + W +  ++R  +Y   VS+ +K+ +D+       +     K  +
Sbjct: 177 ETFAKGISWTINGKHRTLMYNITVSLVKKN-VDICLFNCEPEIYTPQKVHQ 226


>d1sfea2 c.55.7.1 (A:12-92) Ada DNA repair protein {Escherichia
          coli [TaxId: 562]}
          Length = 81

 Score = 23.9 bits (51), Expect = 6.9
 Identities = 6/53 (11%), Positives = 19/53 (35%)

Query: 30 KHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEERD 82
          + G+  +           +L++ +  A  +  + + +     V A L + +  
Sbjct: 21 ERGICAILLGDDDATLISELQQMFPAADNAPADLMFQQHVREVIASLNQRDTP 73


>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus
          subtilis [TaxId: 1423]}
          Length = 278

 Score = 23.8 bits (50), Expect = 7.4
 Identities = 4/38 (10%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 24 LSQSCKKHGVTVVSFH---GWVKQDREDLEKRYEQAKQ 58
          L++  + H +  ++ +    +  +D +   +   + K 
Sbjct: 51 LAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKG 88


>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
          {Human (Homo sapiens), AGX1 [TaxId: 9606]}
          Length = 501

 Score = 23.8 bits (51), Expect = 8.5
 Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 10/38 (26%)

Query: 47 EDLEKRYEQAKQSH-MEHLSENLASVVEAPLTEEERDH 83
           DL+    +A Q H +   +E         L E ++  
Sbjct: 4  NDLKLTLSKAGQEHLLRFWNE---------LEEAQQVE 32


>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of
           mitochondrial p450 systems {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 230

 Score = 23.7 bits (50), Expect = 9.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 29  KKHGVTVVSFHGWVKQDREDLE 50
              GV  VSF  W K D E++ 
Sbjct: 185 DSRGVWPVSFSDWEKLDAEEVS 206


>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 164

 Score = 23.4 bits (50), Expect = 9.9
 Identities = 5/48 (10%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 66  ENLASVVEAPLTEEERDHPQAIKLREL--RMKRLQWELEKRYRNVYGN 111
                     + E   + P+  +   +   +++   +  +RYR  +  
Sbjct: 24  RGYEWDAGDDVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAE 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0421    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 580,435
Number of extensions: 25516
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 31
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.4 bits)