BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781217|ref|YP_003065630.1| hypothetical protein
CLIBASIA_05620 [Candidatus Liberibacter asiaticus str. psy62]
         (162 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 162

 Score =  333 bits (855), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MYAHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSH 60
           MYAHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSH
Sbjct: 1   MYAHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSH 60

Query: 61  MEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHT 120
           MEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHT
Sbjct: 61  MEHLSENLASVVEAPLTEEERDHPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHT 120

Query: 121 IDLKPLMDRVQHSIQSKGLKPVKALDKQTEKPLELPKLTKHD 162
           IDLKPLMDRVQHSIQSKGLKPVKALDKQTEKPLELPKLTKHD
Sbjct: 121 IDLKPLMDRVQHSIQSKGLKPVKALDKQTEKPLELPKLTKHD 162


>gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 185

 Score = 61.6 bits (148), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 10/155 (6%)

Query: 6   YTKERIDNILASFSGGLSLSQSCKKHGVTVVS-FHGWVKQDREDLEKRYEQAKQSHMEHL 64
           Y+ E    IL   + G +L    +K G+   S F+ W+K+D + L++ Y +A Q  ++ L
Sbjct: 21  YSPELFAGILDQVANGKALGHVLRKVGMPKYSTFYRWIKKDLK-LQEAYTEALQCRLDLL 79

Query: 65  SENLASVVEAPLTEEERDHPQAI-KLRELRMKRLQWELEKRYRNVYGNHVSVEQKHTIDL 123
           +E L        T EE  +P    K+R+ + +   + LEK     YG  VSVE KHTIDL
Sbjct: 80  AEELLEEPAP--TAEELANPVFYSKMRDRKQRMGTFLLEKLSNQKYGPRVSVESKHTIDL 137

Query: 124 KPLMDRVQHSIQSKGLKPV---KALDKQTEKPLEL 155
           +P ++R++     K LKP+   +   K TEKPLE+
Sbjct: 138 RPAIERLRE--HYKHLKPIDSERIPHKSTEKPLEI 170


>gi|254780895|ref|YP_003065308.1| hypothetical protein CLIBASIA_03960 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 91

 Score = 27.3 bits (59), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 5  KYTKERIDNILASFSGGL-SLSQSCKKHGVTVVSFHGW 41
          ++   R   ++A+  GGL SL ++C+ + +TV  F  W
Sbjct: 32 RWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSW 69


>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 311

 Score = 23.1 bits (48), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 35 VVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEER-----DHPQAIKL 89
           V+  G     +  L  R+  AK S + H  +   S+V   ++E+E      D P     
Sbjct: 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNA 83

Query: 90 RELR---MKRLQW 99
          ++     M RL W
Sbjct: 84 KDSYHKLMIRLSW 96


>gi|254780431|ref|YP_003064844.1| hypothetical protein CLIBASIA_01580 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 178

 Score = 21.9 bits (45), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 6  YTKERIDNILASFSGGLSLSQ 26
          +T ERID +   +S GLS SQ
Sbjct: 3  WTVERIDKLKKFWSEGLSASQ 23


>gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 293

 Score = 21.6 bits (44), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 123 LKPLMDRVQHSIQSKGLKPVKA 144
           +KP +D++  SI+S    P+KA
Sbjct: 141 VKPFLDKLGVSIKSVKSSPMKA 162


>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 750

 Score = 21.6 bits (44), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 2   YAHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFH 39
           +A+ Y   R   I++SF+  +    S KK G    +FH
Sbjct: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFH 597


>gi|254780915|ref|YP_003065328.1| oligoendopeptidase F [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 21.6 bits (44), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 9   ERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51
           ERI  ++   +    LS +C     T+  F+  +     D EK
Sbjct: 95  ERICELIGRIASYAMLSYNCNLSSPTIRKFYTDINAKLADFEK 137


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.129    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,784
Number of Sequences: 1233
Number of extensions: 3851
Number of successful extensions: 16
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 15
length of query: 162
length of database: 328,796
effective HSP length: 67
effective length of query: 95
effective length of database: 246,185
effective search space: 23387575
effective search space used: 23387575
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 35 (18.1 bits)