HHsearch alignment for GI: 254781218 and conserved domain: COG1191
>COG1191 FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription].
Probab=95.90 E-value=0.084 Score=30.95 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=32.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999729838999999779999999974148899989999999982
Q gi|254781218|r 116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 (205)
Q Consensus 116 ~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~l 165 (205)
T Consensus 202 k~Vl~l~y~eelt~kEI~~~LgISes~VSql~k-------kai~kLr~~l 244 (247)
T COG1191 202 KLVLVLRYKEELTQKEIAEVLGISESRVSRLHK-------KAIKKLRKEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH-------HHHHHHHHHH
T ss_conf 999999997015799999994914989999999-------9999999986