HHsearch alignment for GI: 254781218 and conserved domain: COG1191
>COG1191 FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription].
Probab=93.38 E-value=0.12 Score=29.97 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=5.8
Q ss_pred CCHHHHHHHHCCCHH
Q ss_conf 838999999779999
Q gi|254781218|r 127 MSQIEFGKLLGMPNS 141 (205)
Q Consensus 127 lsq~elA~~lgis~~ 141 (205)
T Consensus 127 pt~~EIA~~L~i~~e 141 (247)
T COG1191 127 PTDEEIAEELGIDKE 141 (247)
T ss_pred CCHHHHHHHHCCCHH
T ss_conf 868999989698999