HHsearch alignment for GI: 254781218 and conserved domain: COG1191

>COG1191 FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription].
Probab=93.38  E-value=0.12  Score=29.97  Aligned_cols=15  Identities=20%  Similarity=0.317  Sum_probs=5.8

Q ss_pred             CCHHHHHHHHCCCHH
Q ss_conf             838999999779999
Q gi|254781218|r  127 MSQIEFGKLLGMPNS  141 (205)
Q Consensus       127 lsq~elA~~lgis~~  141 (205)
T Consensus       127 pt~~EIA~~L~i~~e  141 (247)
T COG1191         127 PTDEEIAEELGIDKE  141 (247)
T ss_pred             CCHHHHHHHHCCCHH
T ss_conf             868999989698999