HHsearch alignment for GI: 254781218 and conserved domain: COG1709
>COG1709 Predicted transcriptional regulator [Transcription].
Probab=98.21 E-value=1.9e-06 Score=59.67 Aligned_cols=53 Identities=32% Similarity=0.465 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHHHHH
Q ss_conf 7799999999972983899999977999999997414889-9989999999982
Q gi|254781218|r 113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVT 165 (205)
Q Consensus 113 ~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~-Ps~~~l~kIa~~l 165 (205)
T Consensus 27 ~pge~lrKWR~~F~iSQ~elA~~l~vSpSVISDYE~GRRk~Pg~~~vkk~V~AL 80 (241)
T COG1709 27 DPGETLRKWREIFNVSQTELARELGVSPSVISDYESGRRKSPGIAFVKKFVEAL 80 (241)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 825899999998182499999872899100312112575686178999999999