HHsearch alignment for GI: 254781218 and conserved domain: COG1709

>COG1709 Predicted transcriptional regulator [Transcription].
Probab=98.21  E-value=1.9e-06  Score=59.67  Aligned_cols=53  Identities=32%  Similarity=0.465  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHHHHH
Q ss_conf             7799999999972983899999977999999997414889-9989999999982
Q gi|254781218|r  113 AIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTI-PEIKPARKIKQVT  165 (205)
Q Consensus       113 ~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~-Ps~~~l~kIa~~l  165 (205)
T Consensus        27 ~pge~lrKWR~~F~iSQ~elA~~l~vSpSVISDYE~GRRk~Pg~~~vkk~V~AL   80 (241)
T COG1709          27 DPGETLRKWREIFNVSQTELARELGVSPSVISDYESGRRKSPGIAFVKKFVEAL   80 (241)
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             825899999998182499999872899100312112575686178999999999