HHsearch alignment for GI: 254781218 and conserved domain: COG2390

>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].

Probab=94.55  E-value=0.091  Score=30.74  Aligned_cols=71  Identities=14%  Similarity=0.157  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH-----HCCCC--------CCCHHHHHHHHHHHCCCHHH
Q ss_conf             668999999999999999985998899999848999999988-----77998--------88999999999982899999
Q gi|254781218|r   23 PEIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLF-----ENGMC--------STSIRYALYLRNEYEISFDW   89 (205)
Q Consensus        23 ~~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~-----E~G~~--------~psi~~l~~la~~~~vs~d~   89 (205)
T Consensus         5 ~~~~~~~~~l~~~~A~lYY~~gltQ~eIA~~LgiSR~~v~rlL~~Ar~~GiV~I~i~~~~~~~~~Le~~L~~~fgL~~a~   84 (321)
T COG2390           5 PDMLMEEERLLARAAWLYYVEGLTQSEIAERLGISRATVSRLLAKAREEGIVKISINSPVEGCLELEQQLKERFGLKEAI   84 (321)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf             30012689999999999984688799999883988999999999999879389996798765399999999965997699


Q ss_pred             HHCC
Q ss_conf             6145
Q gi|254781218|r   90 IYDG   93 (205)
Q Consensus        90 Ll~g   93 (205)
T Consensus        85 VVp~   88 (321)
T COG2390          85 VVPS   88 (321)
T ss_pred             EECC
T ss_conf             9748