HHsearch alignment for GI: 254781218 and conserved domain: COG5499

>COG5499 Predicted transcription regulator containing HTH domain [Transcription].

Probab=97.30  E-value=0.00062  Score=44.11  Aligned_cols=57  Identities=18%  Similarity=0.298  Sum_probs=49.3

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf             9999999972983899999977999999997414889998999999998289999952
Q gi|254781218|r  116 ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY  173 (205)
Q Consensus       116 ~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~  173 (205)
T Consensus        63 e~I~t~Md~~glt~~dLa~~iG-Sks~vS~iL~~rraLTle~ikkL~q~~gIpa~~lI  119 (120)
T COG5499          63 EVIRTLMDQYGLTLADLANEIG-SKSRVSNILSGRRALTLEHIKKLHQRFGIPADVLI  119 (120)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
T ss_conf             9999999993871888899867-61889999732067669999999998695888753