HHsearch alignment for GI: 254781218 and conserved domain: PRK05572
>PRK05572 sporulation sigma factor SigF; Validated.
Probab=91.02 E-value=1.2 Score=23.75 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCC
Q ss_conf 566899999999999999998--599889999984899999998877998889999999999828999996145322100
Q gi|254781218|r 22 TPEIRQYWKDVGTRIKDIRKA--NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR 99 (205)
Q Consensus 22 ~~~~~~~~~~iG~rik~lR~~--~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~ 99 (205)
T Consensus 108 p~~~~~~~~ki~~~~~~l~~~~~r~ps~~eia~~lg~~~~~v~~~~~~~~~~~--sl~~~~~~~d~~~~~l~d~-~~~-- 182 (251)
T PRK05572 108 SRSLKELANKIRKDKEELSKELGRAPTIEELAEYLGVTPEEVVLAQEASRSPQ--SIHETVHENDGDPITLLDQ-IAD-- 182 (251)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCC--CCCCCCCCCCCCHHHHHHH-CCC--
T ss_conf 68899999889999999999878899899999997939999999998817987--5346666789971566541-268--
Q ss_pred CCCCCCHHHHHHHH-------HHHH---HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 00232134554677-------7999---99999972983899999977999999997414
Q gi|254781218|r 100 YEDVTNKKRLDPYA-------IGAR---LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 100 ~~~~~~~~~~d~~~-------iG~r---Lk~lR~~~glsq~elA~~lgis~~tis~~E~g 149 (205)
T Consensus 183 --~~~~~~~~~~~~L~~~l~~L~~rEr~Vi~~ry~~~~tl~EIa~~lgiS~eRVrQI~~~ 240 (251)
T PRK05572 183 --QSEEDDWFDKIALKEAIRELDERERLIIYLRYFKDKTQSEVAKRLGISQVQVSRLEKK 240 (251)
T ss_pred --CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf --7346899999999999972899999999998178988999999979799999999999