HHsearch alignment for GI: 254781218 and conserved domain: PRK05572

>PRK05572 sporulation sigma factor SigF; Validated.
Probab=91.02  E-value=1.2  Score=23.75  Aligned_cols=121  Identities=18%  Similarity=0.166  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCC
Q ss_conf             566899999999999999998--599889999984899999998877998889999999999828999996145322100
Q gi|254781218|r   22 TPEIRQYWKDVGTRIKDIRKA--NNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEVIDRR   99 (205)
Q Consensus        22 ~~~~~~~~~~iG~rik~lR~~--~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~~~~~   99 (205)
T Consensus       108 p~~~~~~~~ki~~~~~~l~~~~~r~ps~~eia~~lg~~~~~v~~~~~~~~~~~--sl~~~~~~~d~~~~~l~d~-~~~--  182 (251)
T PRK05572        108 SRSLKELANKIRKDKEELSKELGRAPTIEELAEYLGVTPEEVVLAQEASRSPQ--SIHETVHENDGDPITLLDQ-IAD--  182 (251)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCC--CCCCCCCCCCCCHHHHHHH-CCC--
T ss_conf             68899999889999999999878899899999997939999999998817987--5346666789971566541-268--


Q ss_pred             CCCCCCHHHHHHHH-------HHHH---HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             00232134554677-------7999---99999972983899999977999999997414
Q gi|254781218|r  100 YEDVTNKKRLDPYA-------IGAR---LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG  149 (205)
Q Consensus       100 ~~~~~~~~~~d~~~-------iG~r---Lk~lR~~~glsq~elA~~lgis~~tis~~E~g  149 (205)
T Consensus       183 --~~~~~~~~~~~~L~~~l~~L~~rEr~Vi~~ry~~~~tl~EIa~~lgiS~eRVrQI~~~  240 (251)
T PRK05572        183 --QSEEDDWFDKIALKEAIRELDERERLIIYLRYFKDKTQSEVAKRLGISQVQVSRLEKK  240 (251)
T ss_pred             --CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             --7346899999999999972899999999998178988999999979799999999999