HHsearch alignment for GI: 254781218 and conserved domain: PRK06986
>PRK06986 fliA flagellar biosynthesis sigma factor; Validated.
Probab=94.95 E-value=0.16 Score=29.29 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHCCCCC---CCHHHHHHHHHHHCCCHHHHHCCCCC--C
Q ss_conf 8999999999999999985--998899999848999999988779988---89999999999828999996145322--1
Q gi|254781218|r 25 IRQYWKDVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFENGMCS---TSIRYALYLRNEYEISFDWIYDGEVI--D 97 (205)
Q Consensus 25 ~~~~~~~iG~rik~lR~~~--gltQ~elA~~~gis~~~is~~E~G~~~---psi~~l~~la~~~~vs~d~Ll~ge~~--~ 97 (205)
T Consensus 90 ~~~~~~~i~~~~~~l~~~~~r~pt~~eia~~l~~s~e~v~~~~~~~~~~~~~sld~~-------~~~~~~~~~~~~~~~~ 162 (234)
T PRK06986 90 VRRNAREVADAIRELEQELGREPTDTEVAEKLGLSLEEYREMLLDTNISQLFSIDDL-------GESGELLTDEDQSEHE 162 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC-------CCCCCCCCCCCCCCCC
T ss_conf 999999999999999998787998999998959499999999998505778687767-------7664311122245789
Q ss_pred CCCCCCCCHHHHHH--H---HHH---HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 00002321345546--7---779---99999999729838999999779999999974148899989999999982
Q gi|254781218|r 98 RRYEDVTNKKRLDP--Y---AIG---ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 (205)
Q Consensus 98 ~~~~~~~~~~~~d~--~---~iG---~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~l 165 (205)
T Consensus 163 ~~~~~~~~~~~~~~l~~~l~~L~~rEr~Ii~l~y~~~~tl~eIa~~lgiS~eRVrQie~~-------AL~kLR~~L 231 (234)
T PRK06986 163 DPLQQLEDEELREALVEAIEKLPEREQLVLSLYYDEELNLKEIGAVLGVSESRVSQIHSQ-------AIKRLRARL 231 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH-------HHHHHHHHH
T ss_conf 999999999999999999980999999999987389989999999979789999999999-------999999987