HHsearch alignment for GI: 254781218 and conserved domain: PRK06986

>PRK06986 fliA flagellar biosynthesis sigma factor; Validated.
Probab=94.95  E-value=0.16  Score=29.29  Aligned_cols=127  Identities=14%  Similarity=0.163  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHCCCCC---CCHHHHHHHHHHHCCCHHHHHCCCCC--C
Q ss_conf             8999999999999999985--998899999848999999988779988---89999999999828999996145322--1
Q gi|254781218|r   25 IRQYWKDVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFENGMCS---TSIRYALYLRNEYEISFDWIYDGEVI--D   97 (205)
Q Consensus        25 ~~~~~~~iG~rik~lR~~~--gltQ~elA~~~gis~~~is~~E~G~~~---psi~~l~~la~~~~vs~d~Ll~ge~~--~   97 (205)
T Consensus        90 ~~~~~~~i~~~~~~l~~~~~r~pt~~eia~~l~~s~e~v~~~~~~~~~~~~~sld~~-------~~~~~~~~~~~~~~~~  162 (234)
T PRK06986         90 VRRNAREVADAIRELEQELGREPTDTEVAEKLGLSLEEYREMLLDTNISQLFSIDDL-------GESGELLTDEDQSEHE  162 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC-------CCCCCCCCCCCCCCCC
T ss_conf             999999999999999998787998999998959499999999998505778687767-------7664311122245789


Q ss_pred             CCCCCCCCHHHHHH--H---HHH---HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             00002321345546--7---779---99999999729838999999779999999974148899989999999982
Q gi|254781218|r   98 RRYEDVTNKKRLDP--Y---AIG---ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT  165 (205)
Q Consensus        98 ~~~~~~~~~~~~d~--~---~iG---~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~l  165 (205)
T Consensus       163 ~~~~~~~~~~~~~~l~~~l~~L~~rEr~Ii~l~y~~~~tl~eIa~~lgiS~eRVrQie~~-------AL~kLR~~L  231 (234)
T PRK06986        163 DPLQQLEDEELREALVEAIEKLPEREQLVLSLYYDEELNLKEIGAVLGVSESRVSQIHSQ-------AIKRLRARL  231 (234)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH-------HHHHHHHHH
T ss_conf             999999999999999999980999999999987389989999999979789999999999-------999999987