HHsearch alignment for GI: 254781218 and conserved domain: PRK07122

>PRK07122 RNA polymerase sigma factor SigF; Reviewed.
Probab=96.21  E-value=0.095  Score=30.61  Aligned_cols=131  Identities=13%  Similarity=0.132  Sum_probs=62.9

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHH---CCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf             100015668999999999999999985--9988999998489999999887---79988899999999998289999961
Q gi|254781218|r   17 YTLIITPEIRQYWKDVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFE---NGMCSTSIRYALYLRNEYEISFDWIY   91 (205)
Q Consensus        17 ~~~~~~~~~~~~~~~iG~rik~lR~~~--gltQ~elA~~~gis~~~is~~E---~G~~~psi~~l~~la~~~~vs~d~Ll   91 (205)
T Consensus       113 ~~IRlP~~~~~~~~ki~~~~~~l~~~~gr~Pt~~EiA~~lg~~~~~v~~~l~~~~~~~~~SlD~~~~~~~~~~~~l~d~~  192 (263)
T PRK07122        113 WSVKVPRRLKELHLRLGRATAELSQRLGRAPTASELAAELGMDREEVVEGLVAGSSYNTLSIDSGGGSGDDDARAIADTL  192 (263)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf             75465799999989999999999998688999999998969399999999987335898778788888886520354641


Q ss_pred             CCCCCCCCCCCCCCHHHHHH--HHHH---HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             45322100002321345546--7779---9999999972983899999977999999997414
Q gi|254781218|r   92 DGEVIDRRYEDVTNKKRLDP--YAIG---ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG  149 (205)
Q Consensus        92 ~ge~~~~~~~~~~~~~~~d~--~~iG---~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g  149 (205)
T Consensus       193 ~d~--~~~~e~~~~~~~L~~~l~~L~eREr~Vi~lry~e~~Tl~EIa~~lGiSreRVrQIe~~  253 (263)
T PRK07122        193 GDV--DAGLDHIENREALRPLLAALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAK  253 (263)
T ss_pred             CCC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             697--6428999999999999975999999999999569998999999989799999999999