HHsearch alignment for GI: 254781218 and conserved domain: PRK07122
>PRK07122 RNA polymerase sigma factor SigF; Reviewed.
Probab=96.21 E-value=0.095 Score=30.61 Aligned_cols=131 Identities=13% Similarity=0.132 Sum_probs=62.9
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHH---CCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 100015668999999999999999985--9988999998489999999887---79988899999999998289999961
Q gi|254781218|r 17 YTLIITPEIRQYWKDVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFE---NGMCSTSIRYALYLRNEYEISFDWIY 91 (205)
Q Consensus 17 ~~~~~~~~~~~~~~~iG~rik~lR~~~--gltQ~elA~~~gis~~~is~~E---~G~~~psi~~l~~la~~~~vs~d~Ll 91 (205)
T Consensus 113 ~~IRlP~~~~~~~~ki~~~~~~l~~~~gr~Pt~~EiA~~lg~~~~~v~~~l~~~~~~~~~SlD~~~~~~~~~~~~l~d~~ 192 (263)
T PRK07122 113 WSVKVPRRLKELHLRLGRATAELSQRLGRAPTASELAAELGMDREEVVEGLVAGSSYNTLSIDSGGGSGDDDARAIADTL 192 (263)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf 75465799999989999999999998688999999998969399999999987335898778788888886520354641
Q ss_pred CCCCCCCCCCCCCCHHHHHH--HHHH---HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 45322100002321345546--7779---9999999972983899999977999999997414
Q gi|254781218|r 92 DGEVIDRRYEDVTNKKRLDP--YAIG---ARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 92 ~ge~~~~~~~~~~~~~~~d~--~~iG---~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g 149 (205)
T Consensus 193 ~d~--~~~~e~~~~~~~L~~~l~~L~eREr~Vi~lry~e~~Tl~EIa~~lGiSreRVrQIe~~ 253 (263)
T PRK07122 193 GDV--DAGLDHIENREALRPLLAALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAK 253 (263)
T ss_pred CCC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 697--6428999999999999975999999999999569998999999989799999999999