HHsearch alignment for GI: 254781218 and conserved domain: PRK07408

>PRK07408 RNA polymerase sigma factor SigF; Reviewed.
Probab=96.60  E-value=0.06  Score=31.85  Aligned_cols=137  Identities=12%  Similarity=0.091  Sum_probs=67.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHH---CCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf             156689999999999999999859--988999998489999999887---799888999999999982899999614532
Q gi|254781218|r   21 ITPEIRQYWKDVGTRIKDIRKANN--KTQKEMAIGANQLESAVNLFE---NGMCSTSIRYALYLRNEYEISFDWIYDGEV   95 (205)
Q Consensus        21 ~~~~~~~~~~~iG~rik~lR~~~g--ltQ~elA~~~gis~~~is~~E---~G~~~psi~~l~~la~~~~vs~d~Ll~ge~   95 (205)
T Consensus       104 iP~~~~~~~~ki~~~~~~l~~~~gr~pt~~EiA~~l~is~~~v~~~~~~~~~~~~~SLd~~~~~~~d~~~~l~d~l~d~~  183 (256)
T PRK07408        104 IPRRWLELQRQAKKVRQELRQELGRQPTDQEIAQALDISLEEWQEIKLALQNRMPLSLDAPVSQDEDGSTSLGDLLPDPR  183 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHCCCCC
T ss_conf             36999999999999999999987899989999989596999999999987278873056647799987611777558999


Q ss_pred             CCCCCCCCCCHHHHHHH---HHHHHHH---HHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             21000023213455467---7799999---9999729838999999779999999974148899989999999982
Q gi|254781218|r   96 IDRRYEDVTNKKRLDPY---AIGARLK---SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT  165 (205)
Q Consensus        96 ~~~~~~~~~~~~~~d~~---~iG~rLk---~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~l  165 (205)
T Consensus       184 ~~~-~~~~~e~~~~L~~~l~~L~eREr~Il~~ry~~~~tl~EIa~~lgvS~~rVsqi~~-------~AL~kLR~~L  251 (256)
T PRK07408        184 YRS-FQLAQEDRIRLQQALAQLEERTREVLEFVFLHDLTQKEAAERLGISPVTVSRRVK-------KGLQQLKKLL  251 (256)
T ss_pred             CCH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH-------HHHHHHHHHH
T ss_conf             753-8899999999999985699999999999963799899999897989999999999-------9999999972