HHsearch alignment for GI: 254781218 and conserved domain: PRK07408
>PRK07408 RNA polymerase sigma factor SigF; Reviewed.
Probab=96.60 E-value=0.06 Score=31.85 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHH---CCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 156689999999999999999859--988999998489999999887---799888999999999982899999614532
Q gi|254781218|r 21 ITPEIRQYWKDVGTRIKDIRKANN--KTQKEMAIGANQLESAVNLFE---NGMCSTSIRYALYLRNEYEISFDWIYDGEV 95 (205)
Q Consensus 21 ~~~~~~~~~~~iG~rik~lR~~~g--ltQ~elA~~~gis~~~is~~E---~G~~~psi~~l~~la~~~~vs~d~Ll~ge~ 95 (205)
T Consensus 104 iP~~~~~~~~ki~~~~~~l~~~~gr~pt~~EiA~~l~is~~~v~~~~~~~~~~~~~SLd~~~~~~~d~~~~l~d~l~d~~ 183 (256)
T PRK07408 104 IPRRWLELQRQAKKVRQELRQELGRQPTDQEIAQALDISLEEWQEIKLALQNRMPLSLDAPVSQDEDGSTSLGDLLPDPR 183 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 36999999999999999999987899989999989596999999999987278873056647799987611777558999
Q ss_pred CCCCCCCCCCHHHHHHH---HHHHHHH---HHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 21000023213455467---7799999---9999729838999999779999999974148899989999999982
Q gi|254781218|r 96 IDRRYEDVTNKKRLDPY---AIGARLK---SIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT 165 (205)
Q Consensus 96 ~~~~~~~~~~~~~~d~~---~iG~rLk---~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~l 165 (205)
T Consensus 184 ~~~-~~~~~e~~~~L~~~l~~L~eREr~Il~~ry~~~~tl~EIa~~lgvS~~rVsqi~~-------~AL~kLR~~L 251 (256)
T PRK07408 184 YRS-FQLAQEDRIRLQQALAQLEERTREVLEFVFLHDLTQKEAAERLGISPVTVSRRVK-------KGLQQLKKLL 251 (256)
T ss_pred CCH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH-------HHHHHHHHHH
T ss_conf 753-8899999999999985699999999999963799899999897989999999999-------9999999972