HHsearch alignment for GI: 254781218 and conserved domain: PRK07500

>PRK07500 rpoH2 RNA polymerase factor sigma-32; Reviewed.
Probab=91.05  E-value=0.22  Score=28.33  Aligned_cols=113  Identities=16%  Similarity=0.240  Sum_probs=53.0

Q ss_pred             CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCC---HHHHHCCCCCCC-CCCCC---CCHHHHHHHH---HH
Q ss_conf             88999998489999999887799888999999999982899---999614532210-00023---2134554677---79
Q gi|254781218|r   46 TQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEIS---FDWIYDGEVIDR-RYEDV---TNKKRLDPYA---IG  115 (205)
Q Consensus        46 tQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs---~d~Ll~ge~~~~-~~~~~---~~~~~~d~~~---iG  115 (205)
T Consensus       150 ~~~eiA~~l~~~~~~v~~~~~~~~~~~~SL~~~~~~d~~~~~~~~d~l~d~~~~p~~~~e~~~~~~~~~~~L~~~l~~L~  229 (289)
T PRK07500        150 IHREIATALGVSLSDVEMMDARLSGPDSSLNAPQSEEDEGRSERMDFLVDDSPLPDEIVESSIDGERRRQWLTQALQTLN  229 (289)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             39999988099999999999997379866668067877774015554046889838999999999999999999985499


Q ss_pred             HHHHH---HH--HHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             99999---99--9729838999999779999999974148899989999999982
Q gi|254781218|r  116 ARLKS---IR--KDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVT  165 (205)
Q Consensus       116 ~rLk~---lR--~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~l  165 (205)
T Consensus       230 eREr~Ii~~r~~~~e~~TL~EIg~~lgvSreRVRQIe~-------kAL~KLR~~L  277 (289)
T PRK07500        230 ERELFIIRERRLREDGATLEALGEELGISKERVRQIEA-------RALEKLRRAL  277 (289)
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHH-------HHHHHHHHHH
T ss_conf             99999999976689985899999997979999999999-------9999999999