HHsearch alignment for GI: 254781218 and conserved domain: PRK07670
>PRK07670 RNA polymerase sigma factor SigD; Validated.
Probab=94.68 E-value=0.28 Score=27.70 Aligned_cols=117 Identities=16% Similarity=0.151 Sum_probs=54.4
Q ss_pred HHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHCCCCC---CCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCH
Q ss_conf 99999999998--5998899999848999999988779988---899999999998289999961453221000023213
Q gi|254781218|r 32 VGTRIKDIRKA--NNKTQKEMAIGANQLESAVNLFENGMCS---TSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK 106 (205)
Q Consensus 32 iG~rik~lR~~--~gltQ~elA~~~gis~~~is~~E~G~~~---psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~ 106 (205)
T Consensus 107 i~~~~~~l~~~~gr~ps~~eia~~lg~s~~~v~~~~~~~~~~~~~Sld~~~~~-~~~~~~~~~~~~d~~~~~pe~~~~~~ 185 (250)
T PRK07670 107 VEAAIEKLEQRYMRNVTPSEVAAELGMSEEEVVTTMNEGFFANLLSIDEKLHD-QDDGENVQVMIRDDKAVTPEEKLVKE 185 (250)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999999998389998889987719999999999998754798036777778-88850477888524679999999999
Q ss_pred HHHHH--H---HHHHH---HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 45546--7---77999---99999972983899999977999999997414
Q gi|254781218|r 107 KRLDP--Y---AIGAR---LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 107 ~~~d~--~---~iG~r---Lk~lR~~~glsq~elA~~lgis~~tis~~E~g 149 (205)
T Consensus 186 ~~~~~L~~~l~~L~~rEr~Vl~l~y~e~~Tl~eIa~~lgvS~erVrQi~~~ 236 (250)
T PRK07670 186 ELIEQLAEKIKELNEKEQLVISLFYKEELTLTEIGQVLNLSTSRISQIHSK 236 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999855899999999997489868999999989799999999999