HHsearch alignment for GI: 254781218 and conserved domain: PRK07670

>PRK07670 RNA polymerase sigma factor SigD; Validated.
Probab=94.68  E-value=0.28  Score=27.70  Aligned_cols=117  Identities=16%  Similarity=0.151  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHCCCCC---CCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCH
Q ss_conf             99999999998--5998899999848999999988779988---899999999998289999961453221000023213
Q gi|254781218|r   32 VGTRIKDIRKA--NNKTQKEMAIGANQLESAVNLFENGMCS---TSIRYALYLRNEYEISFDWIYDGEVIDRRYEDVTNK  106 (205)
Q Consensus        32 iG~rik~lR~~--~gltQ~elA~~~gis~~~is~~E~G~~~---psi~~l~~la~~~~vs~d~Ll~ge~~~~~~~~~~~~  106 (205)
T Consensus       107 i~~~~~~l~~~~gr~ps~~eia~~lg~s~~~v~~~~~~~~~~~~~Sld~~~~~-~~~~~~~~~~~~d~~~~~pe~~~~~~  185 (250)
T PRK07670        107 VEAAIEKLEQRYMRNVTPSEVAAELGMSEEEVVTTMNEGFFANLLSIDEKLHD-QDDGENVQVMIRDDKAVTPEEKLVKE  185 (250)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHCCCCCCHHHHHHHH
T ss_conf             99999999998389998889987719999999999998754798036777778-88850477888524679999999999


Q ss_pred             HHHHH--H---HHHHH---HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             45546--7---77999---99999972983899999977999999997414
Q gi|254781218|r  107 KRLDP--Y---AIGAR---LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG  149 (205)
Q Consensus       107 ~~~d~--~---~iG~r---Lk~lR~~~glsq~elA~~lgis~~tis~~E~g  149 (205)
T Consensus       186 ~~~~~L~~~l~~L~~rEr~Vl~l~y~e~~Tl~eIa~~lgvS~erVrQi~~~  236 (250)
T PRK07670        186 ELIEQLAEKIKELNEKEQLVISLFYKEELTLTEIGQVLNLSTSRISQIHSK  236 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999999999855899999999997489868999999989799999999999