HHsearch alignment for GI: 254781218 and conserved domain: PRK08583
>PRK08583 RNA polymerase sigma factor SigB; Validated.
Probab=94.96 E-value=0.3 Score=27.56 Aligned_cols=127 Identities=15% Similarity=0.144 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHH-CCCC--CCCHHHHHHHH-HHHCCCHHHHHCC
Q ss_conf 015668999999999999999985--9988999998489999999887-7998--88999999999-9828999996145
Q gi|254781218|r 20 IITPEIRQYWKDVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFE-NGMC--STSIRYALYLR-NEYEISFDWIYDG 93 (205)
Q Consensus 20 ~~~~~~~~~~~~iG~rik~lR~~~--gltQ~elA~~~gis~~~is~~E-~G~~--~psi~~l~~la-~~~~vs~d~Ll~g 93 (205)
T Consensus 106 r~P~~~~~~~~ki~~~~~~l~~~~~r~pt~~eiA~~l~~s~e~v~~~l~~~~~~~~~Sld~~~~~d~d~~~~~~~d~~~~ 185 (257)
T PRK08583 106 HVPRRIKELGPKIKKAVDELTDELQRSPKISEIADRLGVSEEEVLEAMEMGKSYQALSVDHSIEADSDGSTVTLLDIVGQ 185 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf 35499999988899999999998089987999998959599999999997516897027888877888771204330489
Q ss_pred CCCCCCCCCCCCHHHHHHHH---HHHHHH---HHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 32210000232134554677---799999---999972983899999977999999997414
Q gi|254781218|r 94 EVIDRRYEDVTNKKRLDPYA---IGARLK---SIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149 (205)
Q Consensus 94 e~~~~~~~~~~~~~~~d~~~---iG~rLk---~lR~~~glsq~elA~~lgis~~tis~~E~g 149 (205)
T Consensus 186 ~--e~~~e~~-e~~~~l~~~l~~L~erEr~Ii~lry~~~~t~~eIa~~lGiS~eRVrQi~~~ 244 (257)
T PRK08583 186 Q--EDGYELT-EQRMILEKILPVLSDREKSIIQCTFIENLSQKETGERLGISQMHVSRLQRQ 244 (257)
T ss_pred C--CCHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 6--6247899-999999999954999999999999579999999999989699999999999