HHsearch alignment for GI: 254781218 and conserved domain: PRK08583

>PRK08583 RNA polymerase sigma factor SigB; Validated.
Probab=94.96  E-value=0.3  Score=27.56  Aligned_cols=127  Identities=15%  Similarity=0.144  Sum_probs=59.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHH-CCCC--CCCHHHHHHHH-HHHCCCHHHHHCC
Q ss_conf             015668999999999999999985--9988999998489999999887-7998--88999999999-9828999996145
Q gi|254781218|r   20 IITPEIRQYWKDVGTRIKDIRKAN--NKTQKEMAIGANQLESAVNLFE-NGMC--STSIRYALYLR-NEYEISFDWIYDG   93 (205)
Q Consensus        20 ~~~~~~~~~~~~iG~rik~lR~~~--gltQ~elA~~~gis~~~is~~E-~G~~--~psi~~l~~la-~~~~vs~d~Ll~g   93 (205)
T Consensus       106 r~P~~~~~~~~ki~~~~~~l~~~~~r~pt~~eiA~~l~~s~e~v~~~l~~~~~~~~~Sld~~~~~d~d~~~~~~~d~~~~  185 (257)
T PRK08583        106 HVPRRIKELGPKIKKAVDELTDELQRSPKISEIADRLGVSEEEVLEAMEMGKSYQALSVDHSIEADSDGSTVTLLDIVGQ  185 (257)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf             35499999988899999999998089987999998959599999999997516897027888877888771204330489


Q ss_pred             CCCCCCCCCCCCHHHHHHHH---HHHHHH---HHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             32210000232134554677---799999---999972983899999977999999997414
Q gi|254781218|r   94 EVIDRRYEDVTNKKRLDPYA---IGARLK---SIRKDKGMSQIEFGKLLGMPNSTLSNYEQG  149 (205)
Q Consensus        94 e~~~~~~~~~~~~~~~d~~~---iG~rLk---~lR~~~glsq~elA~~lgis~~tis~~E~g  149 (205)
T Consensus       186 ~--e~~~e~~-e~~~~l~~~l~~L~erEr~Ii~lry~~~~t~~eIa~~lGiS~eRVrQi~~~  244 (257)
T PRK08583        186 Q--EDGYELT-EQRMILEKILPVLSDREKSIIQCTFIENLSQKETGERLGISQMHVSRLQRQ  244 (257)
T ss_pred             C--CCHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             6--6247899-999999999954999999999999579999999999989699999999999