HHsearch alignment for GI: 254781218 and conserved domain: PRK11041
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional.
Probab=92.30 E-value=0.36 Score=27.07 Aligned_cols=46 Identities=17% Similarity=-0.086 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH---HHHHCCCHHH
Q ss_conf 998899999848999999988779988899999999---9982899999
Q gi|254781218|r 44 NKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYL---RNEYEISFDW 89 (205)
Q Consensus 44 gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~l---a~~~~vs~d~ 89 (205)
T Consensus 9 MaTikDIA~~aGVS~sTVSrvLn~~~~Vs~~Tr~rV~~aa~eLgY~pn~ 57 (341)
T PRK11041 9 MATMKDVALKAGVSTATVSRALMNPEKVSQSTRNRVEQAVLEVGYSPQS 57 (341)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 8889999999797999999997898999999999999999981998388