HHsearch alignment for GI: 254781218 and conserved domain: TIGR02607
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family; InterPro: IPR013430 Proteins in this entry form a distinct group of helix-turn-helix proteins, which are strictly bacterial and nearly always shorter than 110 amino acids. They include the characterised member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is encoded by the upstream member of the gene pair.; GO: 0003677 DNA binding.
Probab=98.45 E-value=4.7e-07 Score=63.38 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=32.3
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHC
Q ss_conf 9999859988999998489999999887799888999999999982899999614
Q gi|254781218|r 38 DIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYD 92 (205)
Q Consensus 38 ~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ 92 (205)
T Consensus 14 EfL~PLg~s~~~LA~~LgVsr~~~sriv~~~~~iT~dmALRL~~~lG~sp~~WLn 68 (81)
T TIGR02607 14 EFLEPLGLSVRALAKALGVSRSTLSRIVNGRRGITADMALRLAKALGTSPEFWLN 68 (81)
T ss_pred HHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 7521047068999987099978888887448998888999999973898768998