HHsearch alignment for GI: 254781218 and conserved domain: TIGR02612
>TIGR02612 mob_myst_A mobile mystery protein A; InterPro: IPR013435 Proteins in this entry are more often encoded within mobilisation-related contexts than not. This includes a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and plasmids in Agrobacterium tumefaciens and Coxiella burnetii. They are found together with mobile mystery protein B, a member of the Fic protein family (IPR003812 from INTERPRO). Mobile mystery protein A is encoded by the upstream member of the gene pair and contains a helix-turn-helix domain..
Probab=97.84 E-value=1.6e-05 Score=53.95 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=61.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC--CCCHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999997298389999997799999999741488--9998999999998289999952472102545677754235678
Q gi|254781218|r 117 RLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRT--IPEIKPARKIKQVTKKHLDWIYFGDEVIVPKSIKRAKGNQSSK 194 (205)
Q Consensus 117 rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~--~Ps~~~l~kIa~~lgvs~d~L~~G~e~~~~~~~~~~~~~~~~~ 194 (205)
T Consensus 29 WvR~~R~ALGms~~QLA~RlGV~p~Rv~~~E~~E~~G~VTL~tlr~aAEAl~C~FVYafVP-----~~sLE~t~~~QArK 103 (150)
T TIGR02612 29 WVRAIRKALGMSGAQLAARLGVTPQRVEAIEKSELSGAVTLKTLRKAAEALDCTFVYAFVP-----KTSLEATVRAQARK 103 (150)
T ss_pred CHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCC-----CCCHHHHHHHHHHH
T ss_conf 1688987725157887665289737799988887555355888999999859844340188-----60278999999999
Q ss_pred HHHHH
Q ss_conf 77654
Q gi|254781218|r 195 KSKKD 199 (205)
Q Consensus 195 ~sk~d 199 (205)
T Consensus 104 vA~~~ 108 (150)
T TIGR02612 104 VAKEI 108 (150)
T ss_pred HHHHH
T ss_conf 99999