HHsearch alignment for GI: 254781218 and conserved domain: pfam01381

>pfam01381 HTH_3 Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI.
Probab=99.27  E-value=1.1e-11  Score=92.10  Aligned_cols=55  Identities=33%  Similarity=0.550  Sum_probs=53.7

Q ss_pred             HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf             9999997298389999997799999999741488999899999999828999995
Q gi|254781218|r  118 LKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWI  172 (205)
Q Consensus       118 Lk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L  172 (205)
T Consensus         1 ir~~R~~~g~tq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l   55 (55)
T pfam01381         1 LKELREELGLSQEELAEKLGVSRSTISKIENGKREPSLETLKKLAEALGVSLDEL   55 (55)
T ss_pred             CHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHC
T ss_conf             9898978299899999998969999999987999999999999999978979879