HHsearch alignment for GI: 254781218 and conserved domain: pfam04814

>pfam04814 HNF-1_N Hepatocyte nuclear factor 1 (HNF-1), N terminus. This family consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerization sequence and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3).
Probab=92.59  E-value=0.7  Score=25.25  Aligned_cols=67  Identities=19%  Similarity=0.173  Sum_probs=46.1

Q ss_pred             HHHHHHHHHH-HHHHHCCCHHHHHHHH----HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
Q ss_conf             7777666543-3310001566899999----99999999999859988999998489999999887799888
Q gi|254781218|r    5 PFLETSLKSL-QEYTLIITPEIRQYWK----DVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCST   71 (205)
Q Consensus         5 ~~~~~~~~~~-~~~~~~~~~~~~~~~~----~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~p   71 (205)
T Consensus        84 pPi~kele~l~~EEaa~qra~Ve~ll~~d~~~v~~~Ik~~m~~h~ipQ~~vv~~TGlnQS~lSq~LnkGt~M  155 (177)
T pfam04814        84 PPILKELERLSPEEAAHQRAEVDRLLREDPWRVAKMIKSYMQQHNIPQREVVDATGLNQSHLSQHLNKGTPM  155 (177)
T ss_pred             CCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf             876603222582588888999999997284999999999998768846678761065599999999668840