HHsearch results for GI: 254781218 and protein with PDBid: 1y9q_A

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=99.64  E-value=6.8e-16  Score=116.65  Aligned_cols=72  Identities=15%  Similarity=0.208  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf             689999999999999999859988999998489999999887799888999999999982899999614532
Q gi|254781218|r   24 EIRQYWKDVGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIYDGEV   95 (205)
Q Consensus        24 ~~~~~~~~iG~rik~lR~~~gltQ~elA~~~gis~~~is~~E~G~~~psi~~l~~la~~~~vs~d~Ll~ge~   95 (205)
                      +-..+...||+|||.+|+++||||++||..+|+|.++||+||+|...|++..|.+||++|+|+++|||.++.
T Consensus         4 ~d~~~~~~ig~rir~~R~~~gls~~~lA~~~gvs~~~ls~iE~g~~~ps~~~l~~ia~~l~v~~~~l~~~~~   75 (192)
T 1y9q_A            4 TDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDP   75 (192)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTTST
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf             377889999999999999819999999999893999999998699877634799999885568999547996