HHsearch results for GI: 254781218 and protein with PDBid: 1y9q_A

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=99.57  E-value=7e-15  Score=110.41  Aligned_cols=68  Identities=25%  Similarity=0.364  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
Q ss_conf             46777999999999729838999999779999999974148899989999999982899999524721
Q gi|254781218|r  110 DPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDE  177 (205)
Q Consensus       110 d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e  177 (205)
                      ....||+|||.+|+.+||||.+||+.+|++++++++||+|+..|++..|.+||++|||+++|||.++.
T Consensus         8 ~~~~ig~rir~~R~~~gls~~~lA~~~gvs~~~ls~iE~g~~~ps~~~l~~ia~~l~v~~~~l~~~~~   75 (192)
T 1y9q_A            8 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDP   75 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTTST
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf             89999999999999819999999999893999999998699877634799999885568999547996