HHsearch results for GI: 254781218 and protein with PDBid: 3ivp_A

>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=99.61  E-value=1.6e-15  Score=114.45  Aligned_cols=76  Identities=18%  Similarity=0.333  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCH
Q ss_conf             3455467779999999997298389999997799999999741488999899999999828999995247210254
Q gi|254781218|r  106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP  181 (205)
Q Consensus       106 ~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~~~~  181 (205)
                      ....|-..||.|||.+|+.+||||.+||+.+|+++++|++||+|.+.|+++.+.+||.+|||+++|||.+......
T Consensus         5 ~~~~d~~~ig~rlk~~R~~~gltq~elA~~lgvs~s~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l~~~~~~~~~   80 (126)
T 3ivp_A            5 EDKYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVK   80 (126)
T ss_dssp             TTSCCTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSCCCCCCC
T ss_pred             HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCC
T ss_conf             1113899999999999998499999996730999879999970777999999999999979689998288875435