HHsearch results for GI: 254781218 and protein with PDBid: 3ivp_A
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=99.61 E-value=1.6e-15 Score=114.45 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCH
Q ss_conf 3455467779999999997298389999997799999999741488999899999999828999995247210254
Q gi|254781218|r 106 KKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIYFGDEVIVP 181 (205)
Q Consensus 106 ~~~~d~~~iG~rLk~lR~~~glsq~elA~~lgis~~tis~~E~g~~~Ps~~~l~kIa~~lgvs~d~L~~G~e~~~~ 181 (205)
....|-..||.|||.+|+.+||||.+||+.+|+++++|++||+|.+.|+++.+.+||.+|||+++|||.+......
T Consensus 5 ~~~~d~~~ig~rlk~~R~~~gltq~elA~~lgvs~s~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l~~~~~~~~~ 80 (126)
T 3ivp_A 5 EDKYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVK 80 (126)
T ss_dssp TTSCCTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSCCCCCCC
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCC
T ss_conf 1113899999999999998499999996730999879999970777999999999999979689998288875435