RPSBLAST alignment of GI: 254781218 and protein with PDBid: 1y9q

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Length = 192

 Score = 55.3 bits (132), Expect = 9e-09
 Identities = 17/68 (25%), Positives = 31/68 (45%)

Query: 114 IGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQVTKKHLDWIY 173
           I  +LK++RK +G+S     +L G+  + L   E+G + P I    KI    +      +
Sbjct: 12  IANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFF 71

Query: 174 FGDEVIVP 181
             D  ++ 
Sbjct: 72  ANDPQLLS 79