RPSBLAST alignment of GI: 254781218 and protein with PDBid: 3ivp

>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} Length = 126

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 17/97 (17%), Positives = 40/97 (41%)

Query: 105 NKKRLDPYAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARKIKQV 164
            + + D  A+G  +K  RK +G+++ + G ++ +    L+N E     P ++    +  +
Sbjct: 4   KEDKYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSL 63

Query: 165 TKKHLDWIYFGDEVIVPKSIKRAKGNQSSKKSKKDKK 201
               +D  +      V  + +R   N+    +  D  
Sbjct: 64  LNVSVDEFFLPASSQVKSTKRRQLENKIDNFTDADLV 100