RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781219|ref|YP_003065632.1| hypothetical protein CLIBASIA_05630 [Candidatus Liberibacter asiaticus str. psy62] (200 letters) >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} (A:1-258) Length = 258 Score = 31.4 bits (70), Expect = 0.085 Identities = 5/47 (10%), Positives = 11/47 (23%), Gaps = 2/47 (4%) Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQFVVN 189 + + FG P A+ P + + + Sbjct: 87 IFNEMMSRQN--VDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQG 131 >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* (A:1-174) Length = 174 Score = 29.0 bits (64), Expect = 0.51 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 2/45 (4%) Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQFV 187 + + LE +K +G D+L+ L + + Sbjct: 8 YIAKTLESAG--VKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHE 50 >2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 1zpd_A* (A:1-180) Length = 180 Score = 28.3 bits (62), Expect = 0.82 Identities = 7/44 (15%), Positives = 10/44 (22%), Gaps = 2/44 (4%) Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQF 186 L L +KH F D + L + Sbjct: 8 YLAERLVQIG--LKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCN 49 >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} (A:1-186) Length = 186 Score = 27.8 bits (61), Expect = 0.97 Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%) Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCF 182 AL+ L D + FG + + + + I Sbjct: 17 ALLSRLRDHG--VGKVFGVVGREAASILFDEVEGIDFVLT 54 >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3d7k_A* (A:1-181) Length = 181 Score = 27.9 bits (61), Expect = 1.0 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 6/51 (11%) Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQFVVNPSEA 193 ++R L ++H FG HI + + + + A Sbjct: 9 LVVRTLIKAG--VEHLFGLHGA----HIDTIFQACLDHDVPIIDTRHEAAA 53 >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone, THDP, metal, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* (A:1-195) Length = 195 Score = 27.9 bits (61), Expect = 1.0 Identities = 4/40 (10%), Positives = 10/40 (25%), Gaps = 2/40 (5%) Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCF 182 ++ L ++H P + A+ Sbjct: 13 VILEALTRHG--VRHICIAPGSRSTLLTLAAAENSAFIHH 50 >1ev7_A Type IIE restriction endonuclease NAEI; APO-NAEI, topoisomerase, helix- turn-helix, CAP, hydrolase; 2.38A {Lechevalieria aerocolonigenes} (A:1-170) Length = 170 Score = 27.9 bits (62), Expect = 1.1 Identities = 10/31 (32%), Positives = 16/31 (51%) Query: 48 IELRRKFAKENGLKTVTEVCPKPKDITYSLS 78 I L R+F +G +T E+ D +S+S Sbjct: 71 INLHREFQFGDGFETDYEIAGVQVDCKFSMS 101 >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} (A:1-186) Length = 186 Score = 27.5 bits (60), Expect = 1.2 Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 2/43 (4%) Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQ 185 ++ LE + ++ FG P + L D Sbjct: 16 LVVSQLEA--QGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRH 56 >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} (A:1-183) Length = 183 Score = 27.6 bits (60), Expect = 1.2 Identities = 7/44 (15%), Positives = 10/44 (22%), Gaps = 2/44 (4%) Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQF 186 L L +KH F D + +L Sbjct: 8 YLAERLVQIG--LKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCN 49 >1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, non-classical hydrogen bonds; 1.80A {Archaeoglobus fulgidus dsm 4304} (A:111-208) Length = 98 Score = 27.3 bits (61), Expect = 1.5 Identities = 5/29 (17%), Positives = 15/29 (51%) Query: 51 RRKFAKENGLKTVTEVCPKPKDITYSLSH 79 R +A+ENG++ ++++ + + Sbjct: 6 RADWAEENGVEKISDLAEFADQLVFGSDP 34 >1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A {Anabaena SP} (A:1-128) Length = 128 Score = 26.7 bits (58), Expect = 2.1 Identities = 7/28 (25%), Positives = 10/28 (35%) Query: 162 PADALSPHISELADEIHTTCFTLQFVVN 189 DAL I ++H +V N Sbjct: 46 GYDALEKAIDAETMKLHHDKHHAAYVNN 73 >3cqn_A Violaxanthin DE-epoxidase, chloroplast; lipocalin, enzyme, xanthophyll cycle, non photochemical quenching, NPQ, antheraxanthin, zeaxanthin; 2.00A {Arabidopsis thaliana} PDB: 3cqr_A (A:) Length = 185 Score = 26.3 bits (57), Expect = 2.7 Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 9/71 (12%) Query: 11 NYLHEDVKFYLDKWCEALYSPESYSNTY---REQKLRDKIIELRRKFAKENGL------K 61 ++ + + + + Y R L + II K AK G + Sbjct: 109 KIENKPEDYIFVYYRGRNDAWDGYGGAVVYTRSSVLPNSIIPELEKAAKSIGRDFSTFIR 168 Query: 62 TVTEVCPKPKD 72 T P+P+ Sbjct: 169 TDNTCGPEPRS 179 >1k8t_A Calmodulin-sensitive adenylate cyclase; edema factor, adenylyl cyclase, anthrax, toxin, lyase; 2.60A {Bacillus anthracis} (A:341-479) Length = 139 Score = 25.9 bits (56), Expect = 4.3 Identities = 13/49 (26%), Positives = 19/49 (38%) Query: 112 DKLNKILKKSVRNYSRDSGHLNRDVIFHSRYALIRYLEDFYKEIKHTFG 160 L+ I + S +DSG + S + YL D+Y H F Sbjct: 35 KNLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGYLSDYYNSANHIFS 83 >1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} (A:) Length = 68 Score = 25.6 bits (56), Expect = 4.4 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 8/40 (20%) Query: 35 SNTYREQKLRDKIIELRR---KFAKENGLKTVTEVCPKPK 71 +N+Y E K + I ELR+ ++ K + VC + Sbjct: 20 ANSYMESKCQAVIQELRKCCAQYPKGR-----SVVCSGFE 54 >1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} (A:) Length = 124 Score = 25.5 bits (56), Expect = 4.5 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 13/82 (15%) Query: 70 PKDITYSLSHFIE----GLIESERSKITEKFKPL-----AVAKVVSDE---LLHDKLNKI 117 P +I + L+ +IE + + + T + L VS E LL L +I Sbjct: 28 PMEIRHLLAQWIETQDWEVASNNETMATILLQNLLIQLDEQLGRVSKEKNLLLIHNLKRI 87 Query: 118 LKKSVRNYSRDSGHLNRDVIFH 139 K + + H+ VI + Sbjct: 88 RKVLQGKFHGNPMHVAV-VISN 108 >2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL315C ATP11; half barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs 138} (A:) Length = 299 Score = 25.6 bits (56), Expect = 4.8 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 22/152 (14%) Query: 29 YSPESYSNTYRE------------------QKLRDKIIELRRKFAKENGLKTVTEVCPKP 70 + S + Y+E ++L D+I E +++ K + L+ + + Sbjct: 8 HHHSSGEDRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAG 67 Query: 71 KDITYSLSHFIEGLIESERSKITEKFKPLAVAKVVSDELLHDKLNKILKKSVRNYSRDSG 130 I + H + K K + D L DK+ + K+ V R Sbjct: 68 SRIHTNKEHKTTKMSNKSNEKSGNVLPKDKPYKTLDDYLKLDKIKDLSKQEVEFLWRAK- 126 Query: 131 HLNRDVIFHSRYALIRYLEDFYKEIKHTFGNP 162 NRD S A++ Y++ F K+ NP Sbjct: 127 WSNRD---DSLVAVVPYVKTFQGMYKYAVKNP 155 >2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus marinus} (A:1-117) Length = 117 Score = 25.5 bits (55), Expect = 5.8 Identities = 7/26 (26%), Positives = 10/26 (38%) Query: 164 DALSPHISELADEIHTTCFTLQFVVN 189 +AL PH+S H +V Sbjct: 43 NALEPHMSAETLTYHHDKHHQTYVDT 68 >3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics center for infectious disease, GRAM-negative bacteria; 1.95A {Anaplasma phagocytophilum HZ} (A:1-113) Length = 113 Score = 25.0 bits (54), Expect = 6.5 Identities = 6/17 (35%), Positives = 9/17 (52%) Query: 162 PADALSPHISELADEIH 178 P + L P+IS + H Sbjct: 29 PYEGLEPYISSHLLDRH 45 >2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} (A:) Length = 144 Score = 25.0 bits (54), Expect = 7.2 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%) Query: 18 KFYLDKWCEALYSPESYSNTYREQKLRDKIIELRRKFAKENG 59 F+ C A + Y N+ Q R+KI +L +G Sbjct: 104 AFFRQHGCTANDANTKY-NSRAAQMYREKIRQLGSAALARHG 144 >1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A {Bacillus anthracis} (A:1-104) Length = 104 Score = 24.6 bits (53), Expect = 8.8 Identities = 8/28 (28%), Positives = 10/28 (35%) Query: 162 PADALSPHISELADEIHTTCFTLQFVVN 189 D L P+I IH +V N Sbjct: 21 DYDELEPYIDSNTLSIHHGKHHATYVNN 48 >2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Length = 149 Score = 24.7 bits (53), Expect = 9.0 Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 3/40 (7%) Query: 18 KFYLDKWCEALYSPESYSNTYREQKLRDKIIELRRKFAKE 57 F+ C + Y N+ Q R+KI Sbjct: 96 SFFHQHGCSTNDTNAKY-NSRAAQLYREKIKS--LASQAT 132 >1mjt_A Nitric-oxide synthase homolog; sanos, NO, NOS, bacterial, MRSA, seitu, oxidoreductase; HET: SUC HEM NAD; 2.40A {Staphylococcus aureus} (A:1-113,A:178-225,A:325-347) Length = 184 Score = 24.8 bits (54), Expect = 9.3 Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 4/34 (11%) Query: 147 YLEDFYKEIKHTFGNPADALSPHISELADEIHTT 180 ++E+ YKE ++ + ++ EI T Sbjct: 10 FIENMYKECH----YETQIINKRLHDIELEIKET 39 >2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} (A:1-35,A:341-492) Length = 187 Score = 24.5 bits (53), Expect = 9.4 Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 141 RYALIRYLEDFYKEIKHTFGNP 162 + A+ RY ED Y + GNP Sbjct: 35 QAAIGRYPEDVYNGDGSSEGNP 56 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.135 0.387 Gapped Lambda K H 0.267 0.0536 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,540,713 Number of extensions: 70715 Number of successful extensions: 302 Number of sequences better than 10.0: 1 Number of HSP's gapped: 302 Number of HSP's successfully gapped: 51 Length of query: 200 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 116 Effective length of database: 2,116,429 Effective search space: 245505764 Effective search space used: 245505764 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.3 bits)