RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781219|ref|YP_003065632.1| hypothetical protein
CLIBASIA_05630 [Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)



>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
           {Bacillus anthracis [TaxId: 1392]}
          Length = 509

 Score = 31.5 bits (71), Expect = 0.058
 Identities = 14/68 (20%), Positives = 24/68 (35%)

Query: 93  TEKFKPLAVAKVVSDELLHDKLNKILKKSVRNYSRDSGHLNRDVIFHSRYALIRYLEDFY 152
           T+      +  + +       L+ I + S     +DSG  +      S   +  YL D+Y
Sbjct: 356 TDPITKAKINTIPTSAEFIKNLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGYLSDYY 415

Query: 153 KEIKHTFG 160
               H F 
Sbjct: 416 NSANHIFS 423


>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus
           plantarum [TaxId: 1590]}
          Length = 174

 Score = 29.5 bits (65), Expect = 0.19
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQFVVNPS 191
           A+I+ LE     + H +G P  +++  +  L+ E     +         
Sbjct: 8   AVIKVLEA--WGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVG 54


>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase
           {Streptomyces clavuligerus [TaxId: 1901]}
          Length = 186

 Score = 28.4 bits (62), Expect = 0.39
 Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 2/43 (4%)

Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQ 185
           AL+  L D    +   FG      +  + +  + I       +
Sbjct: 6   ALLSRLRD--HGVGKVFGVVGREAASILFDEVEGIDFVLTRHE 46


>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans
           [TaxId: 1377]}
          Length = 184

 Score = 27.6 bits (60), Expect = 0.73
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQFVVNP 190
           A+++ LE         +G P+  LS  +  + +E +   F        
Sbjct: 9   AVMKILES--WGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEV 54


>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase
           {Klebsiella pneumoniae [TaxId: 573]}
          Length = 181

 Score = 27.6 bits (60), Expect = 0.76
 Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 2/33 (6%)

Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELAD 175
            ++  LE   + ++  FG P   +      L D
Sbjct: 10  LVVSQLEA--QGVRQVFGIPGAKIDKVFDSLLD 40


>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase
           {Pseudomonas putida [TaxId: 303]}
          Length = 180

 Score = 27.7 bits (60), Expect = 0.81
 Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 2/43 (4%)

Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQ 185
                L    + I   FGNP     P + +  ++        +
Sbjct: 6   TTYELLRR--QGIDTVFGNPGSNALPFLKDFPEDFRYILALQE 46


>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 180

 Score = 27.2 bits (59), Expect = 0.91
 Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 2/45 (4%)

Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQFV 187
            L   L+     +   FG P D     + ++ +            
Sbjct: 8   YLFERLKQ--VNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANE 50


>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic
           subunit {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 175

 Score = 27.0 bits (59), Expect = 1.2
 Identities = 5/47 (10%), Positives = 12/47 (25%), Gaps = 2/47 (4%)

Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQFVVN 189
                +    + +   FG P  A+ P    + +         +    
Sbjct: 9   IFNEMMSR--QNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQG 53


>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase
           {Enterobacter cloacae [TaxId: 550]}
          Length = 178

 Score = 26.4 bits (57), Expect = 1.6
 Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 2/45 (4%)

Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQFV 187
            L+  L D      H FG P D     +  + D            
Sbjct: 8   YLLDRLTD--CGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANE 50


>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas
           mobilis [TaxId: 542]}
          Length = 186

 Score = 26.3 bits (57), Expect = 1.7
 Identities = 7/41 (17%), Positives = 10/41 (24%), Gaps = 2/41 (4%)

Query: 143 ALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFT 183
            L   L      +KH F    D     +  L    +     
Sbjct: 7   YLAERLVQ--IGLKHHFAVAGDYNLVLLDNLLLNKNMEQVY 45


>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445)
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 274

 Score = 25.2 bits (55), Expect = 3.8
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 137 IFHSRY--ALIRYLEDFYKEIKHTFGNPADALSPHI 170
             H  Y   L+ Y E    +  HT     +AL+ H+
Sbjct: 228 CVHPSYQAPLLDYFEAACAKGGHTPHLLREALAWHL 263


>d1eysh1 b.41.1.1 (H:59-259) Photosynthetic reaction centre
           {Thermochromatium tepidum [TaxId: 1050]}
          Length = 201

 Score = 25.2 bits (55), Expect = 4.4
 Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 95  KFKPLAVAKVVSDELLHDKLNKILKKSVRNYSRDSGHLNRDVIFHSRYALIRYLE 149
           K  P+ VA    +  + +        +V     +      DV        IRYLE
Sbjct: 74  KIVPMRVA---KEFSIAEGDPDPRGMTVVGLDGEVAGTVSDVWVDRSEPQIRYLE 125


>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 346

 Score = 25.0 bits (55), Expect = 4.6
 Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 4/34 (11%)

Query: 147 YLEDFYKEIKHTFGNPADALSPHISELADEIHTT 180
           ++E+ YKE           ++  + ++  EI  T
Sbjct: 9   FIENMYKECH----YETQIINKRLHDIELEIKET 38


>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 282

 Score = 24.5 bits (53), Expect = 6.3
 Identities = 17/73 (23%), Positives = 30/73 (41%)

Query: 105 VSDELLHDKLNKILKKSVRNYSRDSGHLNRDVIFHSRYALIRYLEDFYKEIKHTFGNPAD 164
             ++L+   +++ LK    NYS    + +     H R   I  +ED Y E+K      A 
Sbjct: 18  DDEDLISQCVDESLKILAENYSSRPINAHLATRIHRRVYEILGVEDPYAEVKARANEVAR 77

Query: 165 ALSPHISELADEI 177
            + P   E+ +  
Sbjct: 78  QVLPLAKEIVEGS 90


>d1uera1 a.2.11.1 (A:1-84) Cambialistic superoxide dismutase
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 84

 Score = 24.5 bits (53), Expect = 6.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 164 DALSPHISELADEIH 178
           DAL+P IS+   E H
Sbjct: 13  DALAPVISKETVEFH 27


>d1idsa1 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 84

 Score = 23.8 bits (51), Expect = 9.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 164 DALSPHISELADEIH 178
            AL PHIS   +E+H
Sbjct: 13  GALEPHISGQINELH 27


>d1bsma1 a.2.11.1 (A:1-86) Cambialistic superoxide dismutase
           {Propionibacterium shermanii [TaxId: 1752]}
          Length = 86

 Score = 23.8 bits (51), Expect = 9.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 164 DALSPHISELADEIH 178
            AL P+IS    E+H
Sbjct: 13  SALEPYISGEIMELH 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0689    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 775,340
Number of extensions: 37266
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 37
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)