BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781219|ref|YP_003065632.1| hypothetical protein
CLIBASIA_05630 [Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781219|ref|YP_003065632.1| hypothetical protein CLIBASIA_05630 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 200

 Score =  410 bits (1053), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/200 (100%), Positives = 200/200 (100%)

Query: 1   MEIDLQKQFKNYLHEDVKFYLDKWCEALYSPESYSNTYREQKLRDKIIELRRKFAKENGL 60
           MEIDLQKQFKNYLHEDVKFYLDKWCEALYSPESYSNTYREQKLRDKIIELRRKFAKENGL
Sbjct: 1   MEIDLQKQFKNYLHEDVKFYLDKWCEALYSPESYSNTYREQKLRDKIIELRRKFAKENGL 60

Query: 61  KTVTEVCPKPKDITYSLSHFIEGLIESERSKITEKFKPLAVAKVVSDELLHDKLNKILKK 120
           KTVTEVCPKPKDITYSLSHFIEGLIESERSKITEKFKPLAVAKVVSDELLHDKLNKILKK
Sbjct: 61  KTVTEVCPKPKDITYSLSHFIEGLIESERSKITEKFKPLAVAKVVSDELLHDKLNKILKK 120

Query: 121 SVRNYSRDSGHLNRDVIFHSRYALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTT 180
           SVRNYSRDSGHLNRDVIFHSRYALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTT
Sbjct: 121 SVRNYSRDSGHLNRDVIFHSRYALIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTT 180

Query: 181 CFTLQFVVNPSEAELLEKVA 200
           CFTLQFVVNPSEAELLEKVA
Sbjct: 181 CFTLQFVVNPSEAELLEKVA 200


>gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 189

 Score = 23.9 bits (50), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 11/46 (23%)

Query: 55  AKENGLKTVTEVCPK-----------PKDITYSLSHFIEGLIESER 89
           A  NGLK+++E C K           P D  + + H +      ER
Sbjct: 110 AGHNGLKSISEKCGKNYKRLRIGIGRPPDTAHIIRHVLGNFSSPER 155


>gi|254781079|ref|YP_003065492.1| diguanylate cyclase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 266

 Score = 23.9 bits (50), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 17/104 (16%)

Query: 99  LAVAKVVSDELLHDKLNKILKKSVRNYSRDS---------GHLNRDVIFHS------RYA 143
           L +  +    LL      ILK+   +Y+R S         G LN      S      + +
Sbjct: 71  LVIISITISLLLGYISGSILKELFISYNRISQLSRIDCLSGLLNHSAFISSLGSYNEKLS 130

Query: 144 LIRYLEDFYKEIKHTFGNPADALSPHISELADEIHTTCFTLQFV 187
           ++ +  D++K+I   FG+P       I+ L+D++     T  FV
Sbjct: 131 IVFFDIDYFKQINDNFGHPVG--DKVIAFLSDQLVVVFGTPMFV 172


>gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 502

 Score = 23.5 bits (49), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 59  GLKTVTEVCPKPKDITYSLSHFIEGLIESERSKIT 93
           G +T++ V   P D  +  S FIEG   S R  +T
Sbjct: 146 GKQTISPVFGSPLDSRFVFSTFIEG--SSNRVALT 178


>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 675

 Score = 22.3 bits (46), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 73  ITYSLSHFIEGLIESERSKITEKFKPLAVAKVVSDELL 110
           +  +L+H +  +++ ER+K+ ++ + L    V S   L
Sbjct: 199 VDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCL 236


>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 750

 Score = 21.6 bits (44), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 4/30 (13%)

Query: 22  DKWCEALYS----PESYSNTYREQKLRDKI 47
           D  CE   S    P+S++NTY++ + ++ I
Sbjct: 544 DFLCEIFKSDLKDPKSFANTYKDNRYKEII 573


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.135    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,432
Number of Sequences: 1233
Number of extensions: 5281
Number of successful extensions: 25
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 13
length of query: 200
length of database: 328,796
effective HSP length: 70
effective length of query: 130
effective length of database: 242,486
effective search space: 31523180
effective search space used: 31523180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)