Query gi|254781220|ref|YP_003065633.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 130 No_of_seqs 2 out of 4 Neff 1.5 Searched_HMMs 33803 Date Wed Jun 1 23:29:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781220.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1mw9_X DNA topoisomerase I; d 44.2 4.5 0.00013 21.4 -0.4 14 22-35 35-48 (56) 2 >3gvy_A Bacterioferritin; iron 14.9 82 0.0024 13.2 3.2 52 30-81 15-69 (87) 3 >3e2c_A Bacterioferritin; DIIR 13.4 90 0.0027 12.9 4.0 50 31-80 16-68 (84) 4 >3iko_C Nucleoporin NUP84; NPC 13.2 92 0.0027 12.9 4.6 86 26-119 1-100 (109) 5 >1jqn_A Pepcase, PEPC, phospho 12.2 66 0.0019 13.8 0.5 19 6-24 20-38 (131) 6 >3h2t_A Baseplate structural p 11.4 82 0.0024 13.2 0.8 18 21-38 10-27 (27) 7 >2wtl_A Bacterioferritin, BFR; 10.9 1.1E+02 0.0032 12.4 4.0 50 31-80 16-68 (95) 8 >2bpo_A CPR, P450R, NADPH-cyto 10.8 1E+02 0.0031 12.6 1.1 17 2-18 31-47 (60) 9 >2j7u_A RNA dependent RNA poly 10.5 99 0.0029 12.7 0.9 16 90-105 34-49 (110) 10 >3key_A Protein STN1; butterfl 9.5 89 0.0026 13.0 0.4 25 38-62 32-56 (96) No 1 >>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} (X:33-88) Probab=44.18 E-value=4.5 Score=21.37 Aligned_cols=14 Identities=43% Similarity=0.826 Sum_probs=9.8 Q ss_pred CCCCCCCCCCCCEE Q ss_conf 88324688865011 Q gi|254781220|r 22 VNPRMGIEPESNYE 35 (130) Q Consensus 22 ~N~rmgiePe~~~E 35 (130) .-.||||||+-+.+ T Consensus 35 Lv~RMGIDP~~gW~ 48 (56) T 1mw9_X 35 LVNRMGVDPWHNWE 48 (56) T ss_dssp HHHHHTEETTTTTE T ss_pred HHHHCCCCCCCCCC T ss_conf 03215867565873 No 2 >>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxidase activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides 2} (A:75-161) Probab=14.92 E-value=82 Score=13.21 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=37.4 Q ss_pred CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH Q ss_conf 8650111578879999997488999986446788879---999999999999998 Q gi|254781220|r 30 PESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHILE---DLIEEVNRIIVLAKA 81 (130) Q Consensus 30 Pe~~~E~ev~E~Le~~l~~~~~~i~~~~Rt~~T~i~~---D~~ee~~~~I~L~kA 81 (130) -|...|...+..+.++++.|...-|+-.|..--.|++ +-++.+-+-+.|... T Consensus 15 ~Dl~~E~~ai~~l~eai~~ce~~~D~~Sr~lle~IL~dEEeH~d~Letql~lI~~ 69 (87) T 3gvy_A 15 ADLAAEHDARTLYIEARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLMGS 69 (87) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8889999999999999999988699999999999999999999999999999999 No 3 >>3e2c_A Bacterioferritin; DIIRON site, iron storage, metal-binding, heme, iron, oxidoreductase; HET: HEM; 1.80A {Escherichia coli} PDB: 2vxi_A* 1bfr_A* 1bcf_A* 2htn_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* (A:75-158) Probab=13.43 E-value=90 Score=12.95 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=35.9 Q ss_pred CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH Q ss_conf 650111578879999997488999986446788879---99999999999999 Q gi|254781220|r 31 ESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHILE---DLIEEVNRIIVLAK 80 (130) Q Consensus 31 e~~~E~ev~E~Le~~l~~~~~~i~~~~Rt~~T~i~~---D~~ee~~~~I~L~k 80 (130) |...|...++.+.+++..|..+-|+-.|..-..|++ +-++.+.+.+.|.. T Consensus 16 Dl~~E~~ai~~y~eai~~ce~~~D~~sr~lle~IL~dEEeH~d~Letql~lI~ 68 (84) T 3e2c_A 16 DLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDERGHIDWLRTELDLIQ 68 (84) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99888998999999999998869999999999999999999999999999999 No 4 >>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} (C:1-94,C:339-353) Probab=13.22 E-value=92 Score=12.91 Aligned_cols=86 Identities=20% Similarity=0.142 Sum_probs=41.5 Q ss_pred CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHCC----H Q ss_conf 4688865011157887999999748899998644678887999999999999999878----77888---87410----1 Q gi|254781220|r 26 MGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHILEDLIEEVNRIIVLAKAHK----RRLEL---KIFED----N 94 (130) Q Consensus 26 mgiePe~~~E~ev~E~Le~~l~~~~~~i~~~~Rt~~T~i~~D~~ee~~~~I~L~kA~~----r~L~~---~ifed----~ 94 (130) |.+++.++.+++ ++-+++|-+|+-....+.-.-|..+=+...-+.+-.++ +.+++ .-|++ - T Consensus 1 MeV~~~~~~~~~--------vqFa~aL~~yq~~~~n~~~~~DPFdiiq~FrsIaa~~AL~~~~~~~~~d~e~f~NWeLEa 72 (109) T 3iko_C 1 MELSPTYQTERF--------TKFSDTLKEFKIEQNNEQNPIDPFNIIREFRSAAGQLALDLANSGDESNVISSKDWELEA 72 (109) T ss_dssp ------CGGGTH--------HHHHHHHHHHHTTC-------CTHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH T ss_pred CCCCHHHHHHHH--------HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 998713648999--------999999999874447887765679999999999999999987435500578999999999 Q ss_pred HHHHHH---HHHHHCCCCHHHHHHCCCH Q ss_conf 466543---4443127770356738675 Q gi|254781220|r 95 EVWRLL---DEAREDCEGCENCSEHPDQ 119 (130) Q Consensus 95 E~Wrll---dE~~~D~E~~E~~~EHPDQ 119 (130) ..|.|. -.-|.--+...+++|||-. T Consensus 73 KlW~LVE~L~~fR~se~~~de~~~~~~~ 100 (109) T 3iko_C 73 RFWHLVELLLVFRNADLDLDEMSEHPIR 100 (109) T ss_dssp HHHHHHHHHHHHHHHCCCCCCCHHSTTH T ss_pred HHHHHHHHHHHHHCCCCCCCCCHCCHHH T ss_conf 9999999998521135664323208899 No 5 >>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} (A:258-388) Probab=12.24 E-value=66 Score=13.84 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHHHHCCCC Q ss_conf 8899987511366637883 Q gi|254781220|r 6 QYYLEEIEANYEFLSAVNP 24 (130) Q Consensus 6 ~~~~eEI~~N~~F~S~~N~ 24 (130) .+|+.+++.=+..+|.-.. T Consensus 20 ~~y~~~l~~L~~~LS~S~~ 38 (131) T 1jqn_A 20 DLFLKDIQVLVSELSMVEA 38 (131) T ss_dssp HHHHHHHHHHHHHCCCCCC T ss_pred HHHHHHHHHHHHHHHHCCC T ss_conf 9999999999999862535 No 6 >>3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A (A:181-207) Probab=11.43 E-value=82 Score=13.21 Aligned_cols=18 Identities=39% Similarity=0.789 Sum_probs=14.4 Q ss_pred CCCCCCCCCCCCCEEHHH Q ss_conf 788324688865011157 Q gi|254781220|r 21 AVNPRMGIEPESNYEVEV 38 (130) Q Consensus 21 ~~N~rmgiePe~~~E~ev 38 (130) .+||..|.+.+.-|.|.| T Consensus 10 vvnpdtgleedvlydvri 27 (27) T 3h2t_A 10 VVNPDTGLEEDVLYDVRI 27 (27) T ss_dssp CCCSSCCCCSSCEEEEEE T ss_pred EECCCCEEECCCCCEEEE T ss_conf 744652362388866999 No 7 >>2wtl_A Bacterioferritin, BFR; metal binding protein, bacterioferritin A, heme, iron, biliverdin, iron storage, metal-binding; HET: UNL; 2.59A {Mycobacterium tuberculosis} PDB: 3bkn_A* (A:79-173) Probab=10.90 E-value=1.1e+02 Score=12.44 Aligned_cols=50 Identities=12% Similarity=0.242 Sum_probs=34.7 Q ss_pred CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH Q ss_conf 650111578879999997488999986446788879---99999999999999 Q gi|254781220|r 31 ESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHILE---DLIEEVNRIIVLAK 80 (130) Q Consensus 31 e~~~E~ev~E~Le~~l~~~~~~i~~~~Rt~~T~i~~---D~~ee~~~~I~L~k 80 (130) |...|.+.+..+.++++.|-.+-|+-.|..-..|+. +-++.+-+.+.|.+ T Consensus 16 Dl~~E~~ai~~y~eaI~~ae~~~D~~sr~lle~IL~dEEeH~d~LEtqL~lI~ 68 (95) T 2wtl_A 16 DLAIEYDVLNRLKPGIVXCREKQDTTSAVLLEKIVADEEEHIDYLETQLELXD 68 (95) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999998859998999999999999999999999999999 No 8 >>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* (A:352-411) Probab=10.84 E-value=1e+02 Score=12.56 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=9.7 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 32788899987511366 Q gi|254781220|r 2 GQLKQYYLEEIEANYEF 18 (130) Q Consensus 2 G~LK~~~~eEI~~N~~F 18 (130) |+=|.+|+++|..+|.- T Consensus 31 g~dKd~f~~~i~~~~~n 47 (60) T 2bpo_A 31 SKDKDQFAVEITSKYFN 47 (60) T ss_dssp TTCHHHHHHHTGGGTCC T ss_pred HCCHHHHHHHHHHCCCC T ss_conf 25868899999861487 No 9 >>2j7u_A RNA dependent RNA polymerase; nucleoside binding site, flavivirus, high-throughput assay, viral protein; HET: PGE; 1.85A {Dengue virus} PDB: 2j7w_A* (A:126-235) Probab=10.51 E-value=99 Score=12.70 Aligned_cols=16 Identities=50% Similarity=1.005 Sum_probs=13.1 Q ss_pred HHCCHHHHHHHHHHHH Q ss_conf 7410146654344431 Q gi|254781220|r 90 IFEDNEVWRLLDEARE 105 (130) Q Consensus 90 ifed~E~WrlldE~~~ 105 (130) -.+|...|.|.|++|. T Consensus 34 Av~Dp~FW~lVd~ER~ 49 (110) T 2j7u_A 34 AVEDEEFWKLVDRERE 49 (110) T ss_dssp HHHCHHHHHHHHHHHH T ss_pred HHCCCHHHHHHHHHHH T ss_conf 8618278788789999 No 10 >>3key_A Protein STN1; butterfly WING-shaped, helix, chromosomal protein, phosphoprotein, telomere; 2.10A {Saccharomyces cerevisiae} PDB: 3k10_A (A:90-185) Probab=9.54 E-value=89 Score=12.98 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7887999999748899998644678 Q gi|254781220|r 38 VIEKLERALKTSKKLIHFRDRTIRT 62 (130) Q Consensus 38 v~E~Le~~l~~~~~~i~~~~Rt~~T 62 (130) |-+||.-.--|.|+.||+|+.+.+. T Consensus 32 i~~KL~~~~~T~~~IVDiFKE~LrR 56 (96) T 3key_A 32 VQEKLHLPYITTNGIVDVFKECLKR 56 (96) T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 9877187532648899999999999 Done!