Query gi|254781220|ref|YP_003065633.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 130 No_of_seqs 2 out of 4 Neff 1.5 Searched_HMMs 13730 Date Wed Jun 1 11:44:17 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781220.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1x4pa1 a.217.1.1 (A:8-60) Arg 14.8 31 0.0023 13.4 1.4 33 72-106 8-40 (53) 2 d1sva1_ b.121.6.1 (1:) Polyoma 8.8 46 0.0034 12.3 0.7 11 22-33 38-48 (348) 3 d1efnb_ d.102.1.1 (B:) Regulat 8.3 37 0.0027 12.9 0.0 24 101-124 81-104 (133) 4 d1jr8a_ a.24.15.1 (A:) Thiol o 8.1 38 0.0027 12.9 -0.0 22 93-114 80-101 (105) 5 d1jyoa_ d.198.1.1 (A:) Virulen 6.8 65 0.0047 11.3 0.7 30 7-36 63-92 (130) 6 d2au5a1 a.244.1.1 (A:1-132) Hy 6.2 70 0.0051 11.1 2.3 56 29-85 41-99 (132) 7 d1cy9a_ e.10.1.1 (A:) DNA topo 5.5 62 0.0045 11.5 -0.0 22 56-77 106-127 (260) 8 d1ataa_ g.22.1.1 (A:) Ascaris 5.0 56 0.004 11.8 -0.5 11 94-111 9-19 (62) 9 d1sr8a_ e.54.1.1 (A:) Cobalami 5.0 82 0.006 10.7 0.5 12 23-34 172-183 (282) 10 d1eaic_ g.22.1.1 (C:) Ascaris 4.8 59 0.0043 11.6 -0.5 11 94-111 8-18 (61) No 1 >d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]} Probab=14.80 E-value=31 Score=13.42 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=19.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC Q ss_conf 99999999987877888874101466543444312 Q gi|254781220|r 72 VNRIIVLAKAHKRRLELKIFEDNEVWRLLDEARED 106 (130) Q Consensus 72 ~~~~I~L~kA~~r~L~~~ifed~E~WrlldE~~~D 106 (130) |+++|.-.-..|.| ..+-++-+||-|-||.|+. T Consensus 8 V~~ii~G~LspkeR--~~~k~~P~yWFLsde~SlE 40 (53) T d1x4pa1 8 VKRVIEGSLSPKER--TLLKEDPAYWFLSDENSLE 40 (53) T ss_dssp HHHHHHTCSCHHHH--HHHHHSGGGCTTTCCSSSH T ss_pred HHHHHCCCCCHHHH--HHHHCCCCEEEEECCCCHH T ss_conf 99998377888888--8864398738860664014 No 2 >d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40, Sv40 [TaxId: 10633]} Probab=8.83 E-value=46 Score=12.28 Aligned_cols=11 Identities=45% Similarity=1.156 Sum_probs=6.6 Q ss_pred CCCCCCCCCCCC Q ss_conf 883246888650 Q gi|254781220|r 22 VNPRMGIEPESN 33 (130) Q Consensus 22 ~N~rmgiePe~~ 33 (130) .||||| .|+.. T Consensus 38 LnPrmG-~p~~~ 48 (348) T d1sva1_ 38 LNPQMG-NPDEH 48 (348) T ss_dssp ECCBSC-CSSSS T ss_pred ECCCCC-CCCCC T ss_conf 347669-99710 No 3 >d1efnb_ d.102.1.1 (B:) Regulatory factor Nef {Human immunodeficiency virus type 1 [TaxId: 11676]} Probab=8.27 E-value=37 Score=12.94 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=16.0 Q ss_pred HHHHHCCCCHHHHHHCCCHHHHHH Q ss_conf 444312777035673867567665 Q gi|254781220|r 101 DEAREDCEGCENCSEHPDQEHKED 124 (130) Q Consensus 101 dE~~~D~E~~E~~~EHPDQEHkED 124 (130) ++..+.-+|..||--||-|-|.-| T Consensus 81 ~~~ee~~egE~n~LLHP~~~hg~e 104 (133) T d1efnb_ 81 DKVEEANKGENTSLLHPVSLHGMD 104 (133) T ss_dssp ------------------------ T ss_pred CCCCCCCCCCCCCCCCCHHHCCCC T ss_conf 546666787444167753125677 No 4 >d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=8.10 E-value=38 Score=12.88 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=10.1 Q ss_pred CHHHHHHHHHHHHCCCCHHHHH Q ss_conf 0146654344431277703567 Q gi|254781220|r 93 DNEVWRLLDEAREDCEGCENCS 114 (130) Q Consensus 93 d~E~WrlldE~~~D~E~~E~~~ 114 (130) -|.|=+-|.-...+|+...+.| T Consensus 80 HN~VN~~lgKp~~~~~~~~~~Y 101 (105) T d1jr8a_ 80 HNKVNEYLKKDIYDCATILEDY 101 (105) T ss_dssp HHHHHHHTTCCCCCCTTHHHHT T ss_pred HHHHHHHCCCCCCCHHHHHHHH T ss_conf 9999998599986899999998 No 5 >d1jyoa_ d.198.1.1 (A:) Virulence effector SptP secretion chaperone SicP {Salmonella typhimurium [TaxId: 90371]} Probab=6.76 E-value=65 Score=11.34 Aligned_cols=30 Identities=7% Similarity=0.005 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCEEH Q ss_conf 899987511366637883246888650111 Q gi|254781220|r 7 YYLEEIEANYEFLSAVNPRMGIEPESNYEV 36 (130) Q Consensus 7 ~~~eEI~~N~~F~S~~N~rmgiePe~~~E~ 36 (130) .|-.=..+|+.+...-.+.+|++|+++.-+ T Consensus 63 ~~~~LL~~N~~~~~t~g~~l~ld~~~~~il 92 (130) T d1jyoa_ 63 IWRQIMVINGELAANNEGTLAYIDAAETLL 92 (130) T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEGGGTEEE T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCEEE T ss_conf 999999974125542975999956999899 No 6 >d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947 {Enterococcus faecalis [TaxId: 1351]} Probab=6.16 E-value=70 Score=11.14 Aligned_cols=56 Identities=25% Similarity=0.142 Sum_probs=33.0 Q ss_pred CCCCCEEHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8865011157887-9999997488999986446788--8799999999999999987877 Q gi|254781220|r 29 EPESNYEVEVIEK-LERALKTSKKLIHFRDRTIRTH--ILEDLIEEVNRIIVLAKAHKRR 85 (130) Q Consensus 29 ePe~~~E~ev~E~-Le~~l~~~~~~i~~~~Rt~~T~--i~~D~~ee~~~~I~L~kA~~r~ 85 (130) +|+.--+|+---+ |+++..-|..||---- -++.- -.+.+|+++++.|-|--|-+++ T Consensus 41 ~P~VL~~ME~~P~WL~Es~~~~Q~~iV~SL-~~~~N~~~~~~L~~E~~~Li~LY~~~~~~ 99 (132) T d2au5a1 41 SPIVLAEMEKDPNWLEEAAGGMQGVIVQSL-LEDENFSSVEQLKGELARLIRLYFALAKD 99 (132) T ss_dssp CHHHHHHHHHCTTHHHHHHHHHHHHHHHHH-TTCTTCSSHHHHHHHHHHHHHHHHHHHTT T ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999885183089999877678899887-52578574999999999999999999876 No 7 >d1cy9a_ e.10.1.1 (A:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]} Probab=5.47 E-value=62 Score=11.47 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=18.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8644678887999999999999 Q gi|254781220|r 56 RDRTIRTHILEDLIEEVNRIIV 77 (130) Q Consensus 56 ~~Rt~~T~i~~D~~ee~~~~I~ 77 (130) .-||+++.+-++..+.+..+|. T Consensus 106 YPRTds~~l~~~~~~~~~~~i~ 127 (260) T d1cy9a_ 106 YMRTDSTNLSQDAVNMVRGYIS 127 (260) T ss_dssp CSCCCCCCCCHHHHHHHHHHHH T ss_pred ECCCCCCCCCHHHHHHHHHHHH T ss_conf 2146664431889999999999 No 8 >d1ataa_ g.22.1.1 (A:) Ascaris trypsin inhibitor, ATI {Pig roundworm (Ascaris suum) [TaxId: 6253]} Probab=5.00 E-value=56 Score=11.78 Aligned_cols=11 Identities=64% Similarity=1.600 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHCCCCHH Q ss_conf 146654344431277703 Q gi|254781220|r 94 NEVWRLLDEAREDCEGCE 111 (130) Q Consensus 94 ~E~WrlldE~~~D~E~~E 111 (130) ||+| .+|-||| T Consensus 9 NE~W-------~~CggCE 19 (62) T d1ataa_ 9 NEQW-------TKCGGCE 19 (62) T ss_dssp SCEE-------ESSCSCC T ss_pred CCEE-------EECCCCH T ss_conf 6600-------4636730 No 9 >d1sr8a_ e.54.1.1 (A:) Cobalamin biosynthesis protein CbiD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=4.96 E-value=82 Score=10.66 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=0.0 Q ss_pred CCCCCCCCCCCE Q ss_conf 832468886501 Q gi|254781220|r 23 NPRMGIEPESNY 34 (130) Q Consensus 23 N~rmgiePe~~~ 34 (130) |||.||.--+|| T Consensus 172 NprLGI~GGISI 183 (282) T d1sr8a_ 172 NEKVGIKGGISI 183 (282) T ss_dssp GGGGTCBSEECB T ss_pred CCCCCCCCCEEE T ss_conf 643475156378 No 10 >d1eaic_ g.22.1.1 (C:) Ascaris elastase inhibitor {Pig roundworm (Ascaris suum) [TaxId: 6253]} Probab=4.78 E-value=59 Score=11.61 Aligned_cols=11 Identities=73% Similarity=1.836 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHCCCCHH Q ss_conf 146654344431277703 Q gi|254781220|r 94 NEVWRLLDEAREDCEGCE 111 (130) Q Consensus 94 ~E~WrlldE~~~D~E~~E 111 (130) ||+| .+|-+|| T Consensus 8 NE~W-------~eC~~CE 18 (61) T d1eaic_ 8 NEVW-------TECTGCE 18 (61) T ss_dssp TCEE-------ESSBCCC T ss_pred CCEE-------EECCCHH T ss_conf 6523-------4555652 Done!