BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781220|ref|YP_003065633.1| hypothetical protein
CLIBASIA_05635 [Candidatus Liberibacter asiaticus str. psy62]
(130 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254781220|ref|YP_003065633.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040897|gb|ACT57693.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120684|gb|ADV02507.1| hypothetical protein SC1_gp135 [Liberibacter phage SC1]
gi|317120726|gb|ADV02548.1| hypothetical protein SC2_gp135 [Liberibacter phage SC2]
gi|317120787|gb|ADV02608.1| hypothetical protein SC2_gp135 [Liberibacter phage SC2]
gi|317120828|gb|ADV02649.1| hypothetical protein SC1_gp135 [Liberibacter phage SC1]
Length = 130
Score = 174 bits (441), Expect = 3e-42, Method: Composition-based stats.
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTI 60
MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTI
Sbjct: 1 MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTI 60
Query: 61 RTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQE 120
RTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQE
Sbjct: 61 RTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQE 120
Query: 121 HKEDYYASQI 130
HKEDYYASQI
Sbjct: 121 HKEDYYASQI 130
>gi|254780122|ref|YP_003064535.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039799|gb|ACT56595.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120736|gb|ADV02558.1| hypothetical protein SC2_gp185 [Liberibacter phage SC2]
gi|317120797|gb|ADV02618.1| hypothetical protein SC2_gp185 [Liberibacter phage SC2]
Length = 123
Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 1 MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEK---LERALKTSKKLIHFRD 57
MG LK ++ +EI N+ F S N +P+ + E+++ E L+ + ++
Sbjct: 1 MGALKNHFHDEINENFYFHSHPNA----DPDISIEMQISENQRYLDEEISQCNAVVDVFK 56
Query: 58 RTIRTHILE-DLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEH 116
R+ T + + D ++++ I L +A + L+ + E W E D E E EH
Sbjct: 57 RSDSTILDKLDAMDDLKTYISLLQATAKNLKSLL---KEYW----EESLDGEDDEEIYEH 109
Query: 117 PDQEHKEDYYASQI 130
PDQEH+EDYYA+QI
Sbjct: 110 PDQEHREDYYANQI 123
>gi|317120693|gb|ADV02516.1| hypothetical protein SC1_gp185 [Liberibacter phage SC1]
gi|317120837|gb|ADV02658.1| hypothetical protein SC1_gp185 [Liberibacter phage SC1]
Length = 123
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 1 MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEK---LERALKTSKKLIHFRD 57
MG LK ++ +EI N+ F S N +P+ + E+++ E L+ + ++
Sbjct: 1 MGALKNHFHDEINENFYFHSHPNA----DPDISIEMQISENQRYLDEEISQCNAVVDVFK 56
Query: 58 RTIRTHILE-DLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEH 116
R+ T + + D ++++ I L +A + L+ + E W E D E E EH
Sbjct: 57 RSDSTILDKLDAVDDLKTYISLLQATAKNLKSLL---KEYW----EESLDGEDDEEIYEH 109
Query: 117 PDQEHKEDYYASQI 130
PDQEH+EDYYA+QI
Sbjct: 110 PDQEHREDYYANQI 123
>gi|315121961|ref|YP_004062450.1| hypothetical protein CKC_01055 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|315122929|ref|YP_004063418.1| hypothetical protein CKC_05925 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495363|gb|ADR51962.1| hypothetical protein CKC_01055 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496331|gb|ADR52930.1| hypothetical protein CKC_05925 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 128
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 14/136 (10%)
Query: 1 MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEV-----EVIEKLERALKTSKKLIHF 55
MG+LKQ+Y+EEIEANYEF NPR ++PE + E+I L++ L+
Sbjct: 1 MGKLKQHYMEEIEANYEFNCLNNPRFNLDPEPEPSIKEEVEELIRSLDQRFLWCCDLVRD 60
Query: 56 RDRTIRTHILE-DLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCS 114
R+ T + + D +EE+ + + + RLE + E E E
Sbjct: 61 LQRSDYTILDKLDAMEEMRMYLSVLRPTANRLEDLLKESWEEPEKEPEEEP--------R 112
Query: 115 EHPDQEHKEDYYASQI 130
EHPDQEH + YYA QI
Sbjct: 113 EHPDQEHADAYYADQI 128
>gi|327192599|gb|EGE59544.1| transcriptional regulator domain-containing protein [Rhizobium etli
CNPAF512]
Length = 511
Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 32/94 (34%)
Query: 6 QYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHIL 65
++ + I + F + R+ E E+ I++ R S + R + I
Sbjct: 212 DHFEDGIGGMFAFQDHITERVASTVEPTIEIAEIQRSRRDRPNSPAVYDLYLRALAAIID 271
Query: 66 EDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRL 99
E + +L +A E + + W L
Sbjct: 272 ESIENNAIAYGLLQQALAIEPENPMILSHAAWAL 305
>gi|225556604|gb|EEH04892.1| tubulin-tyrosine ligase [Ajellomyces capsulatus G186AR]
Length = 1188
Score = 35.1 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 15/118 (12%)
Query: 4 LKQYYLEEIEANYEFLSAVNPRMG--IEPESNYEVEVIEKLERALKTSKKLIHFRDRTIR 61
++++YL +N+ + + ++P ++E++ E L+ AL + +L
Sbjct: 812 IRKHYLSNSVSNW-VAKHPDSILNAHVKPAVHFELDYAEFLDEALVEAYELQESFQANEG 870
Query: 62 TH-------ILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCEN 112
IL+ + + R I L E + E E W ED E EN
Sbjct: 871 KEEAEKEWWILKPGMSDRGRGIRLF-----NSESALREIFEGWEDDQPDSEDGEDSEN 923
>gi|145489920|ref|XP_001430961.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398063|emb|CAK63563.1| unnamed protein product [Paramecium tetraurelia]
Length = 425
Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 9 LEEIEANYEFLSAVNP---RMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHIL 65
LE I NY+F + I+ EV+V +KL++ + + I D+ +
Sbjct: 184 LESILENYQFHQGRYVGLIKSFIDTLQGTEVQVTQKLDQQTQEKQLFIQTVDKATKKFSA 243
Query: 66 EDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQEH 121
ED H +L L+ + E + R + +G + E QEH
Sbjct: 244 ED-----QEYARNVDGHDYKLFLQELYEKEYQSGFAQNRFNEKGQKLVYESQAQEH 294
>gi|325087612|gb|EGC40922.1| tubulin-tyrosine ligase [Ajellomyces capsulatus H88]
Length = 1206
Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 15/118 (12%)
Query: 4 LKQYYLEEIEANYEFLSAVNPRMG--IEPESNYEVEVIEKLERALKTSKKLIHFRDRTIR 61
++++YL +N+ + + ++P ++E++ E L+ AL + +L
Sbjct: 830 IRKHYLSNSVSNW-VAKHPDSILDAHVKPAVHFELDYAEFLDEALVEAYELQESFQANEG 888
Query: 62 TH-------ILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCEN 112
IL+ + + R I L E + E E W ED E EN
Sbjct: 889 KEEAEKEWWILKPGMSDRGRGIRLF-----NSESALREIFEGWEDDQPDSEDGEDSEN 941
>gi|240281460|gb|EER44963.1| tubulin-tyrosine ligase [Ajellomyces capsulatus H143]
Length = 1229
Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 15/118 (12%)
Query: 4 LKQYYLEEIEANYEFLSAVNPRMG--IEPESNYEVEVIEKLERALKTSKKLIHFRDRTIR 61
++++YL +N+ + + ++P ++E++ E L+ AL + +L
Sbjct: 853 IRKHYLSNSVSNW-VAKHPDSILDAHVKPAVHFELDYAEFLDEALVEAYELQESFQANEG 911
Query: 62 TH-------ILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCEN 112
IL+ + + R I L E + E E W ED E EN
Sbjct: 912 KEEAEKEWWILKPGMSDRGRGIRLF-----NSESALREIFEGWEDDQPDSEDGEDSEN 964
>gi|224106974|ref|XP_002314329.1| predicted protein [Populus trichocarpa]
gi|222863369|gb|EEF00500.1| predicted protein [Populus trichocarpa]
Length = 260
Score = 34.3 bits (77), Expect = 4.9, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 9 LEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHILEDL 68
EI+ N+ LS R+ +SN + + +E+L +K K+LI DR I+ ++
Sbjct: 15 HGEIKDNFRALSNGFQRLNNIKDSNRQSKQLEELTGRMKECKRLIKEFDREIKVEESKNP 74
Query: 69 IEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEARED 106
E ++ ++ + L + LD R +
Sbjct: 75 PEVNKQLNDEKQSMIKELNSYVQLRKTYMNSLDNKRVE 112
>gi|171679545|ref|XP_001904719.1| hypothetical protein [Podospora anserina S mat+]
gi|170939398|emb|CAP64626.1| unnamed protein product [Podospora anserina S mat+]
Length = 947
Score = 34.0 bits (76), Expect = 7.8, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
Query: 20 SAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHILEDLIEEVNRIIVLA 79
+AVNP + E + + E IE + + R+ +EDL++EV +I
Sbjct: 383 NAVNPALVTEIDDDLVKEAIENWDSVVVDPTLDEVLGKRSDGEKEVEDLLDEVTDMIETL 442
Query: 80 KAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEHPDQEHKEDY 125
+ +R L + + + D D N S+ P +E Y
Sbjct: 443 SSFQRNRNLTVPTSQDRYS-ADPNNGDMLRNGNASQQPSEEEMMTY 487
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.312 0.128 0.337
Lambda K H
0.267 0.0379 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 864,499,118
Number of Sequences: 14124377
Number of extensions: 19335672
Number of successful extensions: 92662
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 92632
Number of HSP's gapped (non-prelim): 57
length of query: 130
length of database: 4,842,793,630
effective HSP length: 96
effective length of query: 34
effective length of database: 3,486,853,438
effective search space: 118553016892
effective search space used: 118553016892
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 75 (33.6 bits)