RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781220|ref|YP_003065633.1| hypothetical protein
CLIBASIA_05635 [Candidatus Liberibacter asiaticus str. psy62]
         (130 letters)



>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis
           [TaxId: 1423]}
          Length = 226

 Score = 32.5 bits (73), Expect = 0.013
 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 5/99 (5%)

Query: 28  IEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHILEDLIEEVNRIIVLAKAHKRRLE 87
           I   +N + + +  +++ALK    L  FR++       E  I+   +     +       
Sbjct: 22  IMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFI 81

Query: 88  LKIFEDNEVWRLLDEAREDCEGCENCSEHPDQEHKEDYY 126
           +     N+   L    + D         +  +       
Sbjct: 82  V-----NDDVELALNLKADGIHIGQEDANAKEVRAAIGD 115


>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate
           uridyltransferase GlmU, N-terminal domain {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 250

 Score = 25.8 bits (55), Expect = 1.3
 Identities = 8/80 (10%), Positives = 16/80 (20%)

Query: 47  KTSKKLIHFRDRTIRTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEARED 106
              K L      ++  H+   +        V    HK  L  ++      +    E    
Sbjct: 18  DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTEFVTQSEQLGT 77

Query: 107 CEGCENCSEHPDQEHKEDYY 126
                      +        
Sbjct: 78  GHAVMMTEPILEGLSGHTLV 97


>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
          (Pyrococcus furiosus) [TaxId: 2261]}
          Length = 206

 Score = 25.6 bits (55), Expect = 1.7
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 39 IEKLERALKTSKKLIHFRDRTIRTHILEDLIEEVNRIIVLAKAHKRRL 86
          +E +  AL+     I  R +   T    ++ E    +  L + +    
Sbjct: 20 VESVREALEGGATAIQMRIKNAPT---REMYEIGKTLRQLTREYDALF 64


>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
          Length = 291

 Score = 25.1 bits (55), Expect = 2.2
 Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 46 LKTSKKLIHFRDRTIRTHILEDLIEE-VNRIIVLAKAHKRRLELKIFEDNEVWRL 99
             SK+L+   D+ +  + L  L+   +  I+++     +    ++  D   + +
Sbjct: 20 RGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFGI 74


>d1g73a_ a.7.4.1 (A:) Smac/diablo {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 157

 Score = 24.8 bits (54), Expect = 2.4
 Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 63  HILEDLIEEVNRIIVLAKAHKRRL-ELKIFEDNEVWRLLDEARED 106
             + +  + V  +  L + +   L ++   E++EVW+++  AR +
Sbjct: 43  EAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAE 87


>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
           uptake, BtuD {Escherichia coli [TaxId: 562]}
          Length = 231

 Score = 24.9 bits (54), Expect = 2.4
 Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 1   MGQLKQYYLEEIEANYEFLSAVNPRMGI--EPESNYEVEVIEKLERALKTSKKLIHFRDR 58
            G+ ++  L  +       +    ++ +  EP ++ +V     L++ L      +  +  
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA----LCQQGL 183

Query: 59  TI--RTHILEDLIEEVNRIIVLAK 80
            I   +H L   +   +R  +L  
Sbjct: 184 AIVMSSHDLNHTLRHAHRAWLLKG 207


>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
           falciparum) [TaxId: 5833]}
          Length = 330

 Score = 24.2 bits (51), Expect = 3.4
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 1   MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTI 60
           +G++    L   E   + +S            N  +  +++  RA+ + K  I FRD  +
Sbjct: 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSEL 288

Query: 61  RTHILEDLIEEVNRIIVLA 79
            T +L D+    ++ I++A
Sbjct: 289 -TKVLRDIFVGKSKSIMIA 306


>d1ezga_ b.80.2.1 (A:) Insect cysteine-rich antifreeze protein
           {Yellow mealworm (Tenebrio molitor) [TaxId: 7067]}
          Length = 82

 Score = 24.1 bits (52), Expect = 3.9
 Identities = 5/10 (50%), Positives = 5/10 (50%)

Query: 105 EDCEGCENCS 114
             C GC NC 
Sbjct: 13  GACTGCGNCP 22


>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 192

 Score = 24.0 bits (52), Expect = 4.2
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 59  TIRTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEARE 105
             R H+L  +IE +       +  +R L   +  D+ + +LL +A++
Sbjct: 146 VERAHLLAQVIENLECDPKHYQ--QRTLTFALRTDDPLLQLLQKAQQ 190


>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId:
          287]}
          Length = 292

 Score = 23.6 bits (51), Expect = 5.4
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 46 LKTSKKLIHFRDRTIRTHILEDLIE-EVNRIIVLAKAHKRRLELKIFEDNEVWRL 99
          L  SK+L+   D+ +  + L  L+   +  I++++         ++  D   W L
Sbjct: 20 LAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGL 74


>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT
          {Thermus thermophilus [TaxId: 274]}
          Length = 75

 Score = 23.7 bits (51), Expect = 5.9
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 19 LSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRT--HILEDLIEEVNRII 76
              N  +G       ++ ++++L   ++           + R    + EDL+EEV RI 
Sbjct: 9  PEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIQ 68


>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and
           second domains {Escherichia coli [TaxId: 562]}
          Length = 355

 Score = 22.9 bits (49), Expect = 8.4
 Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 83  KRRLELKIFEDNEVWRLLDEAREDC-EGCENCSEH--PDQEHKED 124
           +RR++ KI+++ E+   L  A ++   G +  ++    + E    
Sbjct: 214 RRRIDQKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRA 258


>d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 395

 Score = 23.0 bits (49), Expect = 9.3
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 66  EDLIEEVNRIIVLAKAHKRRLELKIFEDNEV-WRLLDEAREDCEGCENCSEHPDQEHKED 124
           ED ++   RI    +    +  L    D+ +  R L+E     EG         +E    
Sbjct: 311 EDYLKIGERIWNAERLFNLKAGLDPARDDTLPKRFLEEPMP--EGPNKGHTVRLKEMLPR 368

Query: 125 YYA 127
           YY 
Sbjct: 369 YYK 371


>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain
          {Salmonella typhimurium [TaxId: 90371]}
          Length = 128

 Score = 22.9 bits (49), Expect = 9.8
 Identities = 11/72 (15%), Positives = 27/72 (37%)

Query: 1  MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTI 60
          +    Q + +E +     +      +  E     ++  I +   ++K       F     
Sbjct: 2  ISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQE 61

Query: 61 RTHILEDLIEEV 72
           TH++E+L++E 
Sbjct: 62 TTHLMENLLDEA 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 529,120
Number of extensions: 25092
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 37
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.7 bits)