RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781220|ref|YP_003065633.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter asiaticus str. psy62] (130 letters) >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} Length = 226 Score = 32.5 bits (73), Expect = 0.013 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 5/99 (5%) Query: 28 IEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRTHILEDLIEEVNRIIVLAKAHKRRLE 87 I +N + + + +++ALK L FR++ E I+ + + Sbjct: 22 IMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFI 81 Query: 88 LKIFEDNEVWRLLDEAREDCEGCENCSEHPDQEHKEDYY 126 + N+ L + D + + Sbjct: 82 V-----NDDVELALNLKADGIHIGQEDANAKEVRAAIGD 115 >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 Score = 25.8 bits (55), Expect = 1.3 Identities = 8/80 (10%), Positives = 16/80 (20%) Query: 47 KTSKKLIHFRDRTIRTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEARED 106 K L ++ H+ + V HK L ++ + E Sbjct: 18 DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTEFVTQSEQLGT 77 Query: 107 CEGCENCSEHPDQEHKEDYY 126 + Sbjct: 78 GHAVMMTEPILEGLSGHTLV 97 >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} Length = 206 Score = 25.6 bits (55), Expect = 1.7 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 3/48 (6%) Query: 39 IEKLERALKTSKKLIHFRDRTIRTHILEDLIEEVNRIIVLAKAHKRRL 86 +E + AL+ I R + T ++ E + L + + Sbjct: 20 VESVREALEGGATAIQMRIKNAPT---REMYEIGKTLRQLTREYDALF 64 >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 Score = 25.1 bits (55), Expect = 2.2 Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 46 LKTSKKLIHFRDRTIRTHILEDLIEE-VNRIIVLAKAHKRRLELKIFEDNEVWRL 99 SK+L+ D+ + + L L+ + I+++ + ++ D + + Sbjct: 20 RGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFGI 74 >d1g73a_ a.7.4.1 (A:) Smac/diablo {Human (Homo sapiens) [TaxId: 9606]} Length = 157 Score = 24.8 bits (54), Expect = 2.4 Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 63 HILEDLIEEVNRIIVLAKAHKRRL-ELKIFEDNEVWRLLDEARED 106 + + + V + L + + L ++ E++EVW+++ AR + Sbjct: 43 EAITEYTKAVYTLTSLYRQYTSLLGKMNSEEEDEVWQVIIGARAE 87 >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 Score = 24.9 bits (54), Expect = 2.4 Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 8/84 (9%) Query: 1 MGQLKQYYLEEIEANYEFLSAVNPRMGI--EPESNYEVEVIEKLERALKTSKKLIHFRDR 58 G+ ++ L + + ++ + EP ++ +V L++ L + + Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA----LCQQGL 183 Query: 59 TI--RTHILEDLIEEVNRIIVLAK 80 I +H L + +R +L Sbjct: 184 AIVMSSHDLNHTLRHAHRAWLLKG 207 >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 Score = 24.2 bits (51), Expect = 3.4 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 1 MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTI 60 +G++ L E + +S N + +++ RA+ + K I FRD + Sbjct: 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSEL 288 Query: 61 RTHILEDLIEEVNRIIVLA 79 T +L D+ ++ I++A Sbjct: 289 -TKVLRDIFVGKSKSIMIA 306 >d1ezga_ b.80.2.1 (A:) Insect cysteine-rich antifreeze protein {Yellow mealworm (Tenebrio molitor) [TaxId: 7067]} Length = 82 Score = 24.1 bits (52), Expect = 3.9 Identities = 5/10 (50%), Positives = 5/10 (50%) Query: 105 EDCEGCENCS 114 C GC NC Sbjct: 13 GACTGCGNCP 22 >d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 192 Score = 24.0 bits (52), Expect = 4.2 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Query: 59 TIRTHILEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEARE 105 R H+L +IE + + +R L + D+ + +LL +A++ Sbjct: 146 VERAHLLAQVIENLECDPKHYQ--QRTLTFALRTDDPLLQLLQKAQQ 190 >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 Score = 23.6 bits (51), Expect = 5.4 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 46 LKTSKKLIHFRDRTIRTHILEDLIE-EVNRIIVLAKAHKRRLELKIFEDNEVWRL 99 L SK+L+ D+ + + L L+ + I++++ ++ D W L Sbjct: 20 LAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGL 74 >d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Length = 75 Score = 23.7 bits (51), Expect = 5.9 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 19 LSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTIRT--HILEDLIEEVNRII 76 N +G ++ ++++L ++ + R + EDL+EEV RI Sbjct: 9 PEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIQ 68 >d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and second domains {Escherichia coli [TaxId: 562]} Length = 355 Score = 22.9 bits (49), Expect = 8.4 Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Query: 83 KRRLELKIFEDNEVWRLLDEAREDC-EGCENCSEH--PDQEHKED 124 +RR++ KI+++ E+ L A ++ G + ++ + E Sbjct: 214 RRRIDQKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRA 258 >d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 395 Score = 23.0 bits (49), Expect = 9.3 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%) Query: 66 EDLIEEVNRIIVLAKAHKRRLELKIFEDNEV-WRLLDEAREDCEGCENCSEHPDQEHKED 124 ED ++ RI + + L D+ + R L+E EG +E Sbjct: 311 EDYLKIGERIWNAERLFNLKAGLDPARDDTLPKRFLEEPMP--EGPNKGHTVRLKEMLPR 368 Query: 125 YYA 127 YY Sbjct: 369 YYK 371 >d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]} Length = 128 Score = 22.9 bits (49), Expect = 9.8 Identities = 11/72 (15%), Positives = 27/72 (37%) Query: 1 MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEKLERALKTSKKLIHFRDRTI 60 + Q + +E + + + E ++ I + ++K F Sbjct: 2 ISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQE 61 Query: 61 RTHILEDLIEEV 72 TH++E+L++E Sbjct: 62 TTHLMENLLDEA 73 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.135 0.385 Gapped Lambda K H 0.267 0.0556 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 529,120 Number of extensions: 25092 Number of successful extensions: 111 Number of sequences better than 10.0: 1 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 37 Length of query: 130 Length of database: 2,407,596 Length adjustment: 76 Effective length of query: 54 Effective length of database: 1,364,116 Effective search space: 73662264 Effective search space used: 73662264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (22.7 bits)