Query gi|254781221|ref|YP_003065634.1| hypothetical protein CLIBASIA_05640 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 68 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 23:05:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781221.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3c97_A Signal transduction hi 31.9 24 0.0007 17.0 1.7 15 24-38 26-40 (54) 2 >1f0k_A MURG, UDP-N-acetylgluc 16.8 84 0.0025 14.1 4.3 39 10-48 122-160 (168) 3 >1jr5_A 10 kDa anti-sigma fact 13.7 39 0.0011 15.9 -0.3 40 17-56 39-78 (90) 4 >2pq6_A UDP-glucuronosyl/UDP-g 10.9 1.3E+02 0.0037 13.1 5.3 46 11-56 152-198 (206) 5 >1jko_C HIN recombinase, DNA-i 9.7 1.3E+02 0.0038 13.1 1.3 17 23-39 2-18 (52) 6 >3ju7_A Putative PLP-dependent 8.4 1.6E+02 0.0047 12.6 1.5 12 50-61 23-34 (61) 7 >1rrv_A Glycosyltransferase GT 8.0 1.7E+02 0.0049 12.5 4.5 35 12-46 119-153 (159) 8 >1h2i_A RAD52, DNA repair prot 6.8 1.8E+02 0.0053 12.3 1.0 20 36-55 28-47 (67) 9 >2nq2_C Hypothetical ABC trans 6.7 1.9E+02 0.0057 12.1 1.3 26 4-29 135-161 (214) 10 >1nwb_A Hypothetical protein A 6.5 1.2E+02 0.0037 13.1 0.0 12 13-24 52-63 (72) No 1 >>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} (A:87-140) Probab=31.95 E-value=24 Score=17.01 Aligned_cols=15 Identities=53% Similarity=0.702 Sum_probs=12.3 Q ss_pred CCCCCHHHHHHHHHH Q ss_conf 111888999999986 Q gi|254781221|r 24 PKKLNPDQLCDAVCR 38 (68) Q Consensus 24 pkklnpdqlcdavcr 38 (68) .|.|||.||-|.|-. T Consensus 26 skplnpnqlrdvvlt 40 (54) T 3c97_A 26 SKPLNPNQLRDVVLT 40 (54) T ss_dssp ESSCCHHHHHHHHHH T ss_pred ECCCCHHHHHHHHHH T ss_conf 898999999999999 No 2 >>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} (A:172-339) Probab=16.80 E-value=84 Score=14.08 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=30.9 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999998336323681118889999999865288899999 Q gi|254781221|r 10 STLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQ 48 (68) Q Consensus 10 stllslcgcgladepkklnpdqlcdavcrltleeqkelq 48 (68) ...+.--|+|+.-..+.++|+++-+++-++.-++..+.. T Consensus 122 a~~l~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~~~~r 160 (168) T 1f0k_A 122 ALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMA 160 (168) T ss_dssp HHHHHHTTSEEECCGGGCCHHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHHHCHHHHHHHH T ss_conf 999997899898086549999999999854999999999 No 3 >>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} (A:) Probab=13.74 E-value=39 Score=15.89 Aligned_cols=40 Identities=33% Similarity=0.511 Sum_probs=34.3 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3632368111888999999986528889999999988999 Q gi|254781221|r 17 GCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYE 56 (68) Q Consensus 17 gcgladepkklnpdqlcdavcrltleeqkelqtkvnqrye 56 (68) --|+..+-+.+|.-..-.-+-|||-++.+++-...|+-|| T Consensus 39 E~G~r~~G~eft~~sFrqm~~~Lt~~er~elie~FneG~~ 78 (90) T 1jr5_A 39 EIGVTHEGRKLNQNSFRKIVSELTQEDKKTLIDEFNEGFE 78 (90) T ss_dssp HHTCCSSSSCCCSHHHHHHHHTCCHHHHHHHHTTSSSSST T ss_pred HHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 8378854188888679999987898889999999976778 No 4 >>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} (A:257-462) Probab=10.92 E-value=1.3e+02 Score=13.13 Aligned_cols=46 Identities=7% Similarity=0.026 Sum_probs=33.6 Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHH Q ss_conf 999983363236811188899999998652888-9999999988999 Q gi|254781221|r 11 TLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEE-QKELQTKVNQRYE 56 (68) Q Consensus 11 tllslcgcgladepkklnpdqlcdavcrltlee-qkelqtkvnqrye 56 (68) -.+.-.|+|..-+.+.++++++.+++.++.-.+ -++.-.++.+-.+ T Consensus 152 ~~v~~~g~g~~~~~~~~t~~~i~~ai~~vl~~~~~~~~~~r~~~l~~ 198 (206) T 2pq6_A 152 RFICNEWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKK 198 (206) T ss_dssp HHHHHTSCCEEECCSSCCHHHHHHHHHHHHTSHHHHHHHHHHHHHHH T ss_pred HHHHHHHCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 99999717268608987999999999999769748999999999999 No 5 >>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} (C:) Probab=9.75 E-value=1.3e+02 Score=13.06 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=12.4 Q ss_pred CCCCCCHHHHHHHHHHH Q ss_conf 81118889999999865 Q gi|254781221|r 23 EPKKLNPDQLCDAVCRL 39 (68) Q Consensus 23 epkklnpdqlcdavcrl 39 (68) -|++|+|+|...+.-.+ T Consensus 2 Rp~klt~eq~~~a~~l~ 18 (52) T 1jko_C 2 RPRAINKHEQEQISRLL 18 (52) T ss_dssp CCCSSCTTHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHH T ss_conf 89869999999999999 No 6 >>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} (A:14-51,A:228-250) Probab=8.37 E-value=1.6e+02 Score=12.58 Aligned_cols=12 Identities=33% Similarity=0.741 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHC Q ss_conf 998899999640 Q gi|254781221|r 50 KVNQRYEEHLTK 61 (68) Q Consensus 50 kvnqryeehltk 61 (68) ..|||+||.... T Consensus 23 pinq~feetims 34 (61) T 3ju7_A 23 PINQRFEQTIXS 34 (61) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 799999999999 No 7 >>1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} (A:222-380) Probab=7.98 E-value=1.7e+02 Score=12.48 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=28.3 Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99983363236811188899999998652888999 Q gi|254781221|r 12 LLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKE 46 (68) Q Consensus 12 llslcgcgladepkklnpdqlcdavcrltleeqke 46 (68) .+.-.|+|+.-+++.++++++.+++-++.-.+-++ T Consensus 119 ~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~~~ 153 (159) T 1rrv_A 119 RVAALGIGVAHDGPTPTFESLSAALTTVLAPETRA 153 (159) T ss_dssp HHHHHTSEEECSSSCCCHHHHHHHHHHHTSHHHHH T ss_pred HHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHH T ss_conf 99987988858868999999999999983989999 No 8 >>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} (A:1-67) Probab=6.80 E-value=1.8e+02 Score=12.29 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=16.0 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 98652888999999998899 Q gi|254781221|r 36 VCRLTLEEQKELQTKVNQRY 55 (68) Q Consensus 36 vcrltleeqkelqtkvnqry 55 (68) .+..|-+|...+|++.+|+. T Consensus 28 ~~~yT~~E~~~iq~~L~k~L 47 (67) T 1h2i_A 28 QCQYTAEEYQAIQKALRQRL 47 (67) T ss_dssp CCCCCHHHHHHHHHHHHCCB T ss_pred CCCCCHHHHHHHHHHHHCCC T ss_conf 22220888899999996424 No 9 >>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} (C:1-214) Probab=6.69 E-value=1.9e+02 Score=12.13 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=20.1 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCC-CCH Q ss_conf 89999999999833632368111-888 Q gi|254781221|r 4 KKVLIASTLLSLCGCGLADEPKK-LNP 29 (68) Q Consensus 4 kkvliastllslcgcgladepkk-lnp 29 (68) .+|.||..|..-.--=+.|||-. |.| T Consensus 135 Qrv~iAral~~~p~iLiLDEPt~~LD~ 161 (214) T 2nq2_C 135 QLILIARAIASECKLILLDEPTSALDL 161 (214) T ss_dssp HHHHHHHHHHTTCSEEEESSSSTTSCH T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCH T ss_conf 999999998618987786078777898 No 10 >>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} (A:1-29,A:82-124) Probab=6.47 E-value=1.2e+02 Score=13.15 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=7.0 Q ss_pred HHHHCCCCCCCC Q ss_conf 998336323681 Q gi|254781221|r 13 LSLCGCGLADEP 24 (68) Q Consensus 13 lslcgcgladep 24 (68) -+-||||-.=.+ T Consensus 52 ~~sCGCGeSFsv 63 (72) T 1nwb_A 52 TGSCGCGSSFSC 63 (72) T ss_dssp ------------ T ss_pred CCCCCCCCCEEE T ss_conf 952488568832 Done!