RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781221|ref|YP_003065634.1| hypothetical protein
CLIBASIA_05640 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)



>gnl|CDD|36653 KOG1440, KOG1440, KOG1440, CDP-diacylglycerol synthase [Lipid
           transport and metabolism].
          Length = 432

 Score = 29.1 bits (65), Expect = 0.29
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 28  NPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT 60
              +L D +  LT E+Q  L  K+ +R      
Sbjct: 400 GVSKLLDQILTLTPEQQLNLFEKLQRRLSSKGK 432


>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
           homologous glycosyltransferases involved in the final
           stages of the biosynthesis of antibiotics vancomycin and
           related chloroeremomycin. Gtfs transfer sugar moieties
           from an activated NDP-sugar donor to the oxidatively
           cross-linked heptapeptide core of vancomycin group
           antibiotics. The core structure is important for the
           bioactivity of the antibiotics..
          Length = 401

 Score = 28.1 bits (63), Expect = 0.58
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 17  GCGLADEPKKLNPDQLCDAVCRLT 40
           G G A +P++L  ++L  A+ RL 
Sbjct: 347 GAGPALDPRELTAERLAAALRRLL 370


>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the
           GT1 family of glycosyltransferases. wlbH in Bordetella
           parapertussis has been shown to be required for the
           biosynthesis of a trisaccharide that, when attached to
           the B. pertussis lipopolysaccharide (LPS) core (band B),
           generates band A LPS..
          Length = 377

 Score = 25.8 bits (57), Expect = 2.5
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 28  NPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT 60
           +P+ L +A+ RL  +    L     +R  E  +
Sbjct: 330 DPEALAEAILRLLADPWLRLGRAARRRVAERFS 362


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0762    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 710,236
Number of extensions: 25816
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 6
Length of query: 68
Length of database: 6,263,737
Length adjustment: 39
Effective length of query: 29
Effective length of database: 5,420,986
Effective search space: 157208594
Effective search space used: 157208594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.4 bits)