RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781221|ref|YP_003065634.1| hypothetical protein
CLIBASIA_05640 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)



>gnl|CDD|183180 PRK11530, PRK11530, hypothetical protein; Provisional.
          Length = 183

 Score = 27.7 bits (62), Expect = 0.62
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 1  MTI--KKVLIASTLLSLCGCGLADEPKKLNPD--QLCDAVCRLTLEEQK-ELQTKVNQRY 55
          MT    ++L+  +LL L GC    E ++++     L   + +LT +    E Q ++N   
Sbjct: 1  MTTRYLRLLLLGSLLLLAGCAQQSEVRQMHNSVSTLNQEMTQLTQQAVAIEQQNRLNA-- 58

Query: 56 EEHLTKGAKL 65
            + T G  L
Sbjct: 59 --NSTSGVYL 66


>gnl|CDD|184628 PRK14331, PRK14331, (dimethylallyl)adenosine tRNA
           methylthiotransferase; Provisional.
          Length = 437

 Score = 26.7 bits (59), Expect = 1.5
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 21  ADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYE 56
           A    +   +     + RL LE QKE+  K    YE
Sbjct: 343 AYMEGQEPDEVKTKRMNRL-LELQKEITFKKALSYE 377


>gnl|CDD|182941 PRK11067, PRK11067, outer membrane protein assembly factor YaeT;
          Provisional.
          Length = 803

 Score = 26.2 bits (58), Expect = 1.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 1  MTIKKVLIASTLLS 14
          M +KK+LIAS L S
Sbjct: 1  MAMKKLLIASLLFS 14


>gnl|CDD|183320 PRK11805, PRK11805, N5-glutamine
          S-adenosyl-L-methionine-dependent methyltransferase;
          Provisional.
          Length = 307

 Score = 25.1 bits (56), Expect = 3.9
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)

Query: 27 LNPDQLCDAV--CRLTLEEQKELQTKVNQRYEEHL 59
          L  D   +     RLT  E+  +   + +R  E +
Sbjct: 55 LPLDIP-EPFLDARLTPSEKARILELIERRINERI 88


>gnl|CDD|151756 pfam11315, Med30, Mediator complex subunit 30.  Med30 is a
           metazoan-specific subunit of Mediator, having no
           homologues in yeasts.
          Length = 150

 Score = 25.2 bits (55), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 20  LADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEE 57
              EP+      LC A  +  L+E++EL  KV Q+ ++
Sbjct: 89  YVGEPESAKETSLCSAELKKVLQERRELIEKVKQKNQQ 126


>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated.
          Length = 256

 Score = 24.7 bits (54), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 41  LEEQKELQTKVNQRYEEH 58
           LE+QKE Q ++ + Y+  
Sbjct: 113 LEKQKEYQKEMMELYKSG 130


>gnl|CDD|150410 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
           Mitofilin controls mitochondrial cristae morphology.
           Mitofilin is enriched in the narrow space between the
           inner boundary and the outer membranes, where it forms a
           homotypic interaction and assembles into a large
           multimeric protein complex. The first 78 amino acids
           contain a typical amino-terminal-cleavable mitochondrial
           presequence rich in positive-charged and hydroxylated
           residues and a membrane anchor domain. In addition, it
           has three centrally located coiled coil domains.
          Length = 561

 Score = 24.3 bits (53), Expect = 6.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 30  DQLCDAVCRLTLEEQKELQTKVNQRYEEHLTKGAKLSS 67
           DQL   +  L  EE++EL+  + ++ EE L+K  +   
Sbjct: 241 DQLSKKLAELKAEEEEELERALKEKREELLSKLEEELL 278


>gnl|CDD|166036 PLN02395, PLN02395, glutathione S-transferase.
          Length = 215

 Score = 24.1 bits (52), Expect = 7.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 41  LEEQKELQTKVNQRYEEHLTKGAKLSSD 68
           ++E +E   KV   YE  L+K   L+ D
Sbjct: 132 IKESEEKLAKVLDVYEARLSKSKYLAGD 159


>gnl|CDD|149496 pfam08457, Sfi1, Sfi1 spindle body protein.  This is a family of
           fungal spindle pole body proteins that play a role in
           spindle body duplication. They contain binding sites for
           calmodulin-like proteins called centrins which are
           present in microtubule-organising centres.
          Length = 576

 Score = 24.3 bits (53), Expect = 8.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 38  RLTLEEQKELQTKVNQRYEEHLTKGA 63
           +   +E KEL+ +  Q +EE L + +
Sbjct: 94  KAKAKEIKELEQRAVQFHEEKLIRRS 119


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 978,991
Number of extensions: 43697
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 18
Length of query: 68
Length of database: 5,994,473
Length adjustment: 39
Effective length of query: 29
Effective length of database: 5,151,761
Effective search space: 149401069
Effective search space used: 149401069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)