RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781221|ref|YP_003065634.1| hypothetical protein
CLIBASIA_05640 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)



>2w5v_A Alkaline phosphatase; psychrophiles, cold adaptation, hydrolase;
          HET: SEP; 1.78A {Antarctic bacterium TAB5} PDB: 2w5w_A*
          2w5x_A* 2iuc_A 2iuc_B
          Length = 375

 Score = 29.4 bits (64), Expect = 0.23
 Identities = 8/31 (25%), Positives = 11/31 (35%)

Query: 1  MTIKKVLIASTLLSLCGCGLADEPKKLNPDQ 31
          M +KK++     L L  C       K  P  
Sbjct: 1  MKLKKIVFTLIALGLFSCKTTSVLVKNEPQL 31


>1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A
           {Amycolatopsis orientalis} SCOP: c.87.1.5
          Length = 416

 Score = 28.1 bits (61), Expect = 0.48
 Identities = 6/30 (20%), Positives = 12/30 (40%)

Query: 17  GCGLADEPKKLNPDQLCDAVCRLTLEEQKE 46
           G G+A +      + L  A+  +   E + 
Sbjct: 345 GIGVAHDGPTPTFESLSAALTTVLAPETRA 374


>3ouz_A Biotin carboxylase; structural genomics, center for structural
          genomics of infec diseases, csgid, alpha-beta fold,
          cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A
          {Campylobacter jejuni subsp}
          Length = 446

 Score = 27.8 bits (62), Expect = 0.64
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1  MTIKKVLIA 9
          M IK +LIA
Sbjct: 4  MEIKSILIA 12


>3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET:
           TYD; 2.50A {Micromonospora echinospora}
          Length = 416

 Score = 26.7 bits (58), Expect = 1.2
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 17  GCGLADEPKKLNPDQLCDAVCRL 39
           G G     +K + D L  AV  +
Sbjct: 356 GLGAVLPGEKADGDTLLAAVGAV 378


>2p6p_A Glycosyl transferase; GT-B family, X-RAY-diffraction,urdamycina-
           biosynthesis; 1.88A {Streptomyces fradiae}
          Length = 384

 Score = 26.7 bits (57), Expect = 1.3
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 17  GCGLADEPKKLNPDQLCDAVCRL 39
           G  +A  P + + + + D+   L
Sbjct: 322 GAAIALLPGEDSTEAIADSCQEL 344


>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
           {Micromonospora echinospora}
          Length = 402

 Score = 26.4 bits (57), Expect = 1.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 17  GCGLADEPKKLNPDQLCDAVCRL 39
           G G    P +L P  + +AV RL
Sbjct: 341 GLGSVLRPDQLEPASIREAVERL 363


>3h74_A Pyridoxal kinase; PSI-II, structural genomics, protein structure
          initiative, NEW YORK SGX research center for structural
          genomics; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A*
          3ibq_A*
          Length = 282

 Score = 25.9 bits (56), Expect = 2.0
 Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 1  MTIKKVLIASTLLSLCGCGL-ADEP 24
          M++  +L+A  L ++ G  L +  P
Sbjct: 1  MSLSTMLVAEDLSAVGGISLSSALP 25


>2v25_A Major cell-binding factor; antigen, adhesin, aspartate,
          glutamate, transport, ABC transport, virulence factor,
          receptor; 1.49A {Campylobacter jejuni}
          Length = 259

 Score = 25.6 bits (54), Expect = 2.6
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 1  MTIKKVLIASTLLSLCGCGLA 21
          M  +K L+   + +L  C   
Sbjct: 1  MVFRKSLLKLAVFALGACVAF 21


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0673    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 511,571
Number of extensions: 16864
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 14
Length of query: 68
Length of database: 5,693,230
Length adjustment: 38
Effective length of query: 30
Effective length of database: 4,771,958
Effective search space: 143158740
Effective search space used: 143158740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)