BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781221|ref|YP_003065634.1| hypothetical protein
CLIBASIA_05640 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781221|ref|YP_003065634.1| hypothetical protein CLIBASIA_05640 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 68

 Score =  137 bits (345), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT 60
          MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT
Sbjct: 1  MTIKKVLIASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT 60

Query: 61 KGAKLSSD 68
          KGAKLSSD
Sbjct: 61 KGAKLSSD 68


>gi|254781180|ref|YP_003065593.1| hypothetical protein CLIBASIA_05435 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 71

 Score = 28.5 bits (62), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 22/30 (73%)

Query: 22 DEPKKLNPDQLCDAVCRLTLEEQKELQTKV 51
          +EP+K+  DQ+ +A+  L  EE+++LQ ++
Sbjct: 23 EEPQKVTVDQINNAIASLIPEERRDLQDRM 52


>gi|254781181|ref|YP_003065594.1| hypothetical protein CLIBASIA_05440 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 85

 Score = 25.4 bits (54), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 25/42 (59%)

Query: 19 GLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEHLT 60
           LA+  +KL  DQ+ +++  L  E+++EL  +  ++Y + L 
Sbjct: 40 SLANASQKLTVDQIDNSIMFLYPEQRQELAKRYKEKYNDVLI 81


>gi|254781130|ref|YP_003065543.1| hypothetical protein CLIBASIA_05160 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 378

 Score = 24.3 bits (51), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 8   IASTLLSLCGCGLADEPKKLNPDQLCDAVCRLTLEEQKELQTKVNQRYEEH 58
           I    +   G  LA  P  + P  L  A+  L L+E KEL+  ++++ EEH
Sbjct: 313 INEVFVDTIGGYLAPNPSVIIP-HLAKAIQEL-LQEVKELRDMIDKQNEEH 361


>gi|254780953|ref|YP_003065366.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
          Length = 190

 Score = 20.8 bits (42), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 12 LLSLCGCGLADEPKK 26
          + ++ GCGLA   KK
Sbjct: 12 MTTISGCGLASREKK 26


>gi|254781211|ref|YP_003065624.1| hypothetical protein CLIBASIA_05590 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 234

 Score = 20.8 bits (42), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 42  EEQKELQTKVNQRYE 56
           EE+K LQTK+   YE
Sbjct: 119 EERKLLQTKLGSDYE 133


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.131    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,348
Number of Sequences: 1233
Number of extensions: 1063
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 68
length of database: 328,796
effective HSP length: 39
effective length of query: 29
effective length of database: 280,709
effective search space:  8140561
effective search space used:  8140561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)