Query         gi|254781222|ref|YP_003065635.1| hypothetical protein CLIBASIA_05645 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 70
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 23:14:59 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781222.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3ggz_E Vacuolar protein-sorti   9.9 1.1E+02  0.0032   14.1   0.9   10   46-55     20-29  (29)
  2 >2hin_A GP39, repressor protei   9.5      93  0.0028   14.4   0.5   14   52-65      6-19  (35)
  3 >3fbz_A ORF140, putative uncha   6.4 1.2E+02  0.0036   13.9  -0.1   37   15-51      7-57  (140)
  4 >3ci9_A Heat shock factor-bind   6.1 1.5E+02  0.0043   13.4   0.2   29    6-34     12-40  (48)
  5 >1hbw_A Regulatory protein GAL   5.7 2.4E+02  0.0072   12.3   1.4   18    6-23     38-55  (57)
  6 >3i4l_A A-type ATP synthase ca   5.6 2.5E+02  0.0073   12.2   2.4   39   10-48     56-95  (148)
  7 >2r6g_F Maltose transport syst   5.5 1.8E+02  0.0054   12.9   0.4   10   11-20      9-18  (33)
  8 >1wn4_A Vontr protein; helix,    5.5 1.6E+02  0.0046   13.3   0.0   14   52-67     14-27  (28)
  9 >1r6u_A Tryptophanyl-tRNA synt   5.3 2.6E+02  0.0077   12.1   1.3   10   35-44      6-15  (29)
 10 >1wak_A Serine/threonine-prote   5.2 2.6E+02  0.0078   12.1   1.6   19   29-47     37-55  (62)

No 1  
>>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae} (E:)
Probab=9.93  E-value=1.1e+02  Score=14.11  Aligned_cols=10  Identities=60%  Similarity=0.959  Sum_probs=7.4

Q ss_pred             HHHHHHHHHH
Q ss_conf             9888887633
Q gi|254781222|r   46 ECHRIRALRG   55 (70)
Q Consensus        46 echriralrg   55 (70)
                      -..|+|||||
T Consensus        20 laqrlralrg   29 (29)
T 3ggz_E           20 LAQRLRALRG   29 (29)
T ss_pred             HHHHHHHHCC
T ss_conf             9999998629


No 2  
>>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} (A:1-35)
Probab=9.51  E-value=93  Score=14.42  Aligned_cols=14  Identities=50%  Similarity=0.835  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             76332143321100
Q gi|254781222|r   52 ALRGFNDVKKGALG   65 (70)
Q Consensus        52 alrgfndvkkgalg   65 (70)
                      ..|-|.||.|.|.|
T Consensus         6 lirhfgdvekaa~g   19 (35)
T 2hin_A            6 LVRHFGDVEKAAVG   19 (35)
T ss_dssp             HHHHHSSHHHHHHH
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99984008887401


No 3  
>>3fbz_A ORF140, putative uncharacterized protein; archaeal virus, extremophiles, lipothrixviridae, structural protein; HET: BOG; 2.30A {Acidianus filamentous virus 1} (A:)
Probab=6.43  E-value=1.2e+02  Score=13.85  Aligned_cols=37  Identities=30%  Similarity=0.423  Sum_probs=18.8

Q ss_pred             HHHCCCCCCC----------CCCCCCH----HHHHHCHHHHHHHHHHHHHH
Q ss_conf             9720023201----------3445201----44210489999999988888
Q gi|254781222|r   15 LFQQSSTDRY----------GRIEPMT----KKYKITKEEHRVFSECHRIR   51 (70)
Q Consensus        15 lfqqsstdry----------griepmt----kkykitkeehrvfsechrir   51 (70)
                      -+.|.|+|||          |-|-|-.    -.-.+|..-..-|...|.+|
T Consensus         7 K~RQDS~DRYq~K~Yi~R~iGGivP~emA~tVT~~~TA~W~~~~~py~K~R   57 (140)
T 3fbz_A            7 KLRQDSTDRYKTKLYLWRNLGGLIPEDXAISVTESITADWKQYNDXXSKVR   57 (140)
T ss_dssp             --------CHHHHHGGGTTCBCBCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             675031467899999999706879889998886567666876068899999


No 4  
>>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens} (A:)
Probab=6.09  E-value=1.5e+02  Score=13.42  Aligned_cols=29  Identities=31%  Similarity=0.470  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             45999999997200232013445201442
Q gi|254781222|r    6 EPLEQTIKGLFQQSSTDRYGRIEPMTKKY   34 (70)
Q Consensus         6 epleqtikglfqqsstdrygriepmtkky   34 (70)
                      +-|-|.+..-||.-|..-.|||+-|..+-
T Consensus        12 q~LLqQmQ~kFq~mSd~Ii~riDdM~~Ri   40 (48)
T 3ci9_A           12 QTLLQQMQDKFQTISDQIIGRIDDMSSRI   40 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999988999999999988368


No 5  
>>1hbw_A Regulatory protein GAL4; transcriptional activator, galactose and melibiose metabolism, dimerization domain, coiled-coil dimeric; NMR {Saccharomyces cerevisiae} (A:)
Probab=5.75  E-value=2.4e+02  Score=12.28  Aligned_cols=18  Identities=28%  Similarity=0.604  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHCCCCCC
Q ss_conf             459999999972002320
Q gi|254781222|r    6 EPLEQTIKGLFQQSSTDR   23 (70)
Q Consensus         6 epleqtikglfqqsstdr   23 (70)
                      .++.+-++|||-|..+|.
T Consensus        38 ~~ir~~L~~l~~~~~~~~   55 (57)
T 1hbw_A           38 RDIEALLTGLFVQDNVNK   55 (57)
T ss_dssp             HHHHHHHHHHCCSCCSSC
T ss_pred             HHHHHHHHCHHHHCCCCC
T ss_conf             649999853101145667


No 6  
>>3i4l_A A-type ATP synthase catalytic subunit A; hydrolase; HET: ANP; 2.40A {Pyrococcus horikoshii} PDB: 3i72_A 3i73_A* 3ikj_A 1vdz_A (A:441-588)
Probab=5.59  E-value=2.5e+02  Score=12.23  Aligned_cols=39  Identities=13%  Similarity=0.221  Sum_probs=30.5

Q ss_pred             HHHH-HHHHCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHH
Q ss_conf             9999-99720023201344520144210489999999988
Q gi|254781222|r   10 QTIK-GLFQQSSTDRYGRIEPMTKKYKITKEEHRVFSECH   48 (70)
Q Consensus        10 qtik-glfqqsstdrygriepmtkkykitkeehrvfsech   48 (70)
                      .-|+ +.+||++-|.+-.--|+.|.+.+-+.-...+..|-
T Consensus        56 ~~ire~fLqQnaf~~~D~~~~~~Kq~~ml~~I~~~~~~~~   95 (148)
T 3i4l_A           56 RMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTM   95 (148)
T ss_dssp             HHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999860699999974268999999999999998777689


No 7  
>>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:327-359)
Probab=5.51  E-value=1.8e+02  Score=12.92  Aligned_cols=10  Identities=60%  Similarity=0.800  Sum_probs=7.3

Q ss_pred             HHHHHHHCCC
Q ss_conf             9999972002
Q gi|254781222|r   11 TIKGLFQQSS   20 (70)
Q Consensus        11 tikglfqqss   20 (70)
                      ..+|||.||-
T Consensus         9 iF~GlFNqsF   18 (33)
T 2r6g_F            9 IFKGLFNQSF   18 (33)
T ss_dssp             HHHHHTCSSS
T ss_pred             HHHHHHCCCC
T ss_conf             9999850245


No 8  
>>1wn4_A Vontr protein; helix, plant protein; NMR {Synthetic} (A:)
Probab=5.48  E-value=1.6e+02  Score=13.26  Aligned_cols=14  Identities=64%  Similarity=1.044  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             7633214332110011
Q gi|254781222|r   52 ALRGFNDVKKGALGGF   67 (70)
Q Consensus        52 alrgfndvkkgalggf   67 (70)
                      ||-.|  .|||.|||.
T Consensus        14 alvaf--akkgnlggl   27 (28)
T 1wn4_A           14 ALVAF--AKKGNLGGL   27 (28)
T ss_dssp             HHHHH--HHHHSSSCC
T ss_pred             HHHHH--HHCCCCCCC
T ss_conf             99999--861777799


No 9  
>>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} (A:329-357)
Probab=5.30  E-value=2.6e+02  Score=12.13  Aligned_cols=10  Identities=60%  Similarity=0.757  Sum_probs=6.9

Q ss_pred             HHCHHHHHHH
Q ss_conf             1048999999
Q gi|254781222|r   35 KITKEEHRVF   44 (70)
Q Consensus        35 kitkeehrvf   44 (70)
                      .-|.||||-+
T Consensus         6 ~~T~eehr~~   15 (29)
T 1r6u_A            6 RDTIEEHRQF   15 (29)
T ss_dssp             CSSHHHHHHH
T ss_pred             CCCHHHHHHC
T ss_conf             8641013214


No 10 
>>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* (A:317-378)
Probab=5.21  E-value=2.6e+02  Score=12.09  Aligned_cols=19  Identities=26%  Similarity=0.501  Sum_probs=15.6

Q ss_pred             CCHHHHHHCHHHHHHHHHH
Q ss_conf             2014421048999999998
Q gi|254781222|r   29 PMTKKYKITKEEHRVFSEC   47 (70)
Q Consensus        29 pmtkkykitkeehrvfsec   47 (70)
                      -+..||+.+++|-..|++-
T Consensus        37 VL~ekY~~~~~eA~~f~~F   55 (62)
T 1wak_A           37 VLVEKYEWSQEEAAGFTDF   55 (62)
T ss_dssp             HHHHTSCCCHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCHHHHHH
T ss_conf             3333226662016999999


Done!