Query gi|254781222|ref|YP_003065635.1| hypothetical protein CLIBASIA_05645 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 70 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 23:14:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781222.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3ggz_E Vacuolar protein-sorti 9.9 1.1E+02 0.0032 14.1 0.9 10 46-55 20-29 (29) 2 >2hin_A GP39, repressor protei 9.5 93 0.0028 14.4 0.5 14 52-65 6-19 (35) 3 >3fbz_A ORF140, putative uncha 6.4 1.2E+02 0.0036 13.9 -0.1 37 15-51 7-57 (140) 4 >3ci9_A Heat shock factor-bind 6.1 1.5E+02 0.0043 13.4 0.2 29 6-34 12-40 (48) 5 >1hbw_A Regulatory protein GAL 5.7 2.4E+02 0.0072 12.3 1.4 18 6-23 38-55 (57) 6 >3i4l_A A-type ATP synthase ca 5.6 2.5E+02 0.0073 12.2 2.4 39 10-48 56-95 (148) 7 >2r6g_F Maltose transport syst 5.5 1.8E+02 0.0054 12.9 0.4 10 11-20 9-18 (33) 8 >1wn4_A Vontr protein; helix, 5.5 1.6E+02 0.0046 13.3 0.0 14 52-67 14-27 (28) 9 >1r6u_A Tryptophanyl-tRNA synt 5.3 2.6E+02 0.0077 12.1 1.3 10 35-44 6-15 (29) 10 >1wak_A Serine/threonine-prote 5.2 2.6E+02 0.0078 12.1 1.6 19 29-47 37-55 (62) No 1 >>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae} (E:) Probab=9.93 E-value=1.1e+02 Score=14.11 Aligned_cols=10 Identities=60% Similarity=0.959 Sum_probs=7.4 Q ss_pred HHHHHHHHHH Q ss_conf 9888887633 Q gi|254781222|r 46 ECHRIRALRG 55 (70) Q Consensus 46 echriralrg 55 (70) -..|+||||| T Consensus 20 laqrlralrg 29 (29) T 3ggz_E 20 LAQRLRALRG 29 (29) T ss_pred HHHHHHHHCC T ss_conf 9999998629 No 2 >>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} (A:1-35) Probab=9.51 E-value=93 Score=14.42 Aligned_cols=14 Identities=50% Similarity=0.835 Sum_probs=10.8 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 76332143321100 Q gi|254781222|r 52 ALRGFNDVKKGALG 65 (70) Q Consensus 52 alrgfndvkkgalg 65 (70) ..|-|.||.|.|.| T Consensus 6 lirhfgdvekaa~g 19 (35) T 2hin_A 6 LVRHFGDVEKAAVG 19 (35) T ss_dssp HHHHHSSHHHHHHH T ss_pred HHHHHHHHHHHHCC T ss_conf 99984008887401 No 3 >>3fbz_A ORF140, putative uncharacterized protein; archaeal virus, extremophiles, lipothrixviridae, structural protein; HET: BOG; 2.30A {Acidianus filamentous virus 1} (A:) Probab=6.43 E-value=1.2e+02 Score=13.85 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=18.8 Q ss_pred HHHCCCCCCC----------CCCCCCH----HHHHHCHHHHHHHHHHHHHH Q ss_conf 9720023201----------3445201----44210489999999988888 Q gi|254781222|r 15 LFQQSSTDRY----------GRIEPMT----KKYKITKEEHRVFSECHRIR 51 (70) Q Consensus 15 lfqqsstdry----------griepmt----kkykitkeehrvfsechrir 51 (70) -+.|.|+||| |-|-|-. -.-.+|..-..-|...|.+| T Consensus 7 K~RQDS~DRYq~K~Yi~R~iGGivP~emA~tVT~~~TA~W~~~~~py~K~R 57 (140) T 3fbz_A 7 KLRQDSTDRYKTKLYLWRNLGGLIPEDXAISVTESITADWKQYNDXXSKVR 57 (140) T ss_dssp --------CHHHHHGGGTTCBCBCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH T ss_conf 675031467899999999706879889998886567666876068899999 No 4 >>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens} (A:) Probab=6.09 E-value=1.5e+02 Score=13.42 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=20.7 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHH Q ss_conf 45999999997200232013445201442 Q gi|254781222|r 6 EPLEQTIKGLFQQSSTDRYGRIEPMTKKY 34 (70) Q Consensus 6 epleqtikglfqqsstdrygriepmtkky 34 (70) +-|-|.+..-||.-|..-.|||+-|..+- T Consensus 12 q~LLqQmQ~kFq~mSd~Ii~riDdM~~Ri 40 (48) T 3ci9_A 12 QTLLQQMQDKFQTISDQIIGRIDDMSSRI 40 (48) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999988999999999988368 No 5 >>1hbw_A Regulatory protein GAL4; transcriptional activator, galactose and melibiose metabolism, dimerization domain, coiled-coil dimeric; NMR {Saccharomyces cerevisiae} (A:) Probab=5.75 E-value=2.4e+02 Score=12.28 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHCCCCCC Q ss_conf 459999999972002320 Q gi|254781222|r 6 EPLEQTIKGLFQQSSTDR 23 (70) Q Consensus 6 epleqtikglfqqsstdr 23 (70) .++.+-++|||-|..+|. T Consensus 38 ~~ir~~L~~l~~~~~~~~ 55 (57) T 1hbw_A 38 RDIEALLTGLFVQDNVNK 55 (57) T ss_dssp HHHHHHHHHHCCSCCSSC T ss_pred HHHHHHHHCHHHHCCCCC T ss_conf 649999853101145667 No 6 >>3i4l_A A-type ATP synthase catalytic subunit A; hydrolase; HET: ANP; 2.40A {Pyrococcus horikoshii} PDB: 3i72_A 3i73_A* 3ikj_A 1vdz_A (A:441-588) Probab=5.59 E-value=2.5e+02 Score=12.23 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=30.5 Q ss_pred HHHH-HHHHCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHH Q ss_conf 9999-99720023201344520144210489999999988 Q gi|254781222|r 10 QTIK-GLFQQSSTDRYGRIEPMTKKYKITKEEHRVFSECH 48 (70) Q Consensus 10 qtik-glfqqsstdrygriepmtkkykitkeehrvfsech 48 (70) .-|+ +.+||++-|.+-.--|+.|.+.+-+.-...+..|- T Consensus 56 ~~ire~fLqQnaf~~~D~~~~~~Kq~~ml~~I~~~~~~~~ 95 (148) T 3i4l_A 56 RMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTM 95 (148) T ss_dssp HHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9999860699999974268999999999999998777689 No 7 >>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (F:327-359) Probab=5.51 E-value=1.8e+02 Score=12.92 Aligned_cols=10 Identities=60% Similarity=0.800 Sum_probs=7.3 Q ss_pred HHHHHHHCCC Q ss_conf 9999972002 Q gi|254781222|r 11 TIKGLFQQSS 20 (70) Q Consensus 11 tikglfqqss 20 (70) ..+|||.||- T Consensus 9 iF~GlFNqsF 18 (33) T 2r6g_F 9 IFKGLFNQSF 18 (33) T ss_dssp HHHHHTCSSS T ss_pred HHHHHHCCCC T ss_conf 9999850245 No 8 >>1wn4_A Vontr protein; helix, plant protein; NMR {Synthetic} (A:) Probab=5.48 E-value=1.6e+02 Score=13.26 Aligned_cols=14 Identities=64% Similarity=1.044 Sum_probs=9.5 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 7633214332110011 Q gi|254781222|r 52 ALRGFNDVKKGALGGF 67 (70) Q Consensus 52 alrgfndvkkgalggf 67 (70) ||-.| .|||.|||. T Consensus 14 alvaf--akkgnlggl 27 (28) T 1wn4_A 14 ALVAF--AKKGNLGGL 27 (28) T ss_dssp HHHHH--HHHHSSSCC T ss_pred HHHHH--HHCCCCCCC T ss_conf 99999--861777799 No 9 >>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} (A:329-357) Probab=5.30 E-value=2.6e+02 Score=12.13 Aligned_cols=10 Identities=60% Similarity=0.757 Sum_probs=6.9 Q ss_pred HHCHHHHHHH Q ss_conf 1048999999 Q gi|254781222|r 35 KITKEEHRVF 44 (70) Q Consensus 35 kitkeehrvf 44 (70) .-|.||||-+ T Consensus 6 ~~T~eehr~~ 15 (29) T 1r6u_A 6 RDTIEEHRQF 15 (29) T ss_dssp CSSHHHHHHH T ss_pred CCCHHHHHHC T ss_conf 8641013214 No 10 >>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* (A:317-378) Probab=5.21 E-value=2.6e+02 Score=12.09 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=15.6 Q ss_pred CCHHHHHHCHHHHHHHHHH Q ss_conf 2014421048999999998 Q gi|254781222|r 29 PMTKKYKITKEEHRVFSEC 47 (70) Q Consensus 29 pmtkkykitkeehrvfsec 47 (70) -+..||+.+++|-..|++- T Consensus 37 VL~ekY~~~~~eA~~f~~F 55 (62) T 1wak_A 37 VLVEKYEWSQEEAAGFTDF 55 (62) T ss_dssp HHHHTSCCCHHHHHHHHHH T ss_pred HHHHHCCCCCCCCHHHHHH T ss_conf 3333226662016999999 Done!