Query gi|254781222|ref|YP_003065635.1| hypothetical protein CLIBASIA_05645 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 70
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:43:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781222.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f9ca1 b.81.1.7 (A:3-322) Hyp 96.9 1.8E-05 1.3E-09 47.0 -3.2 24 46-69 23-46 (320)
2 d1whra_ d.68.7.1 (A:) R3H doma 3.7 1.4E+02 0.01 11.5 2.2 42 7-58 35-76 (124)
3 d1vs6z1 d.325.1.2 (Z:1-70) Rib 3.5 1E+02 0.0076 12.1 -0.1 21 17-37 47-67 (70)
4 d2hjsa2 d.81.1.1 (A:130-319) U 3.0 1.7E+02 0.012 11.1 2.3 18 35-52 79-96 (190)
5 d1t4ba2 d.81.1.1 (A:134-354) A 2.8 1.8E+02 0.013 11.0 2.3 20 35-54 104-123 (221)
6 d2de6a2 d.129.3.3 (A:143-384) 2.3 2.1E+02 0.015 10.6 1.1 32 37-68 164-202 (242)
7 d1irza_ a.4.1.11 (A:) Arr10-B 2.2 2.2E+02 0.016 10.5 1.8 16 34-49 8-23 (64)
8 d1f5qb2 a.74.1.1 (B:147-252) V 2.1 2E+02 0.014 10.7 0.0 19 25-43 67-85 (106)
9 d2fzta1 a.46.3.1 (A:1-78) Hypo 2.1 2.2E+02 0.016 10.4 0.6 12 42-53 61-72 (78)
10 d2a6sa1 d.298.1.1 (A:1-83) Tox 2.0 2E+02 0.015 10.6 -0.1 11 60-70 48-58 (83)
No 1
>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}
Probab=96.87 E-value=1.8e-05 Score=46.97 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 988888763321433211001101
Q gi|254781222|r 46 ECHRIRALRGFNDVKKGALGGFYR 69 (70)
Q Consensus 46 echriralrgfndvkkgalggfyr 69 (70)
--|||||||.|.|||.|.||||-.
T Consensus 23 ~~~~~~a~~~~~~~~~~~~gg~~~ 46 (320)
T d2f9ca1 23 LLRQVIAVTDFNDVKAGTSGGWVD 46 (320)
T ss_dssp EEEEEEECSCCSSSCTTCEEEEES
T ss_pred EEEEEEEEECCCCCCCCCCCCEEE
T ss_conf 699999862205312688775435
No 2
>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.74 E-value=1.4e+02 Score=11.48 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5999999997200232013445201442104899999999888887633214
Q gi|254781222|r 7 PLEQTIKGLFQQSSTDRYGRIEPMTKKYKITKEEHRVFSECHRIRALRGFND 58 (70)
Q Consensus 7 pleqtikglfqqsstdrygriepmtkkykitkeehrvfsechriralrgfnd 58 (70)
-+|++|..+.+.+....+ ..+||++.+ |.| +|++-+.-|+.-
T Consensus 35 ~lE~~l~~Fi~d~~~~~~-~fppM~s~~-------R~~--vH~lAe~ygL~s 76 (124)
T d1whra_ 35 KLEQEILEFINDNNNQFK-KFPQMTSYH-------RML--LHRVAAYFGMDH 76 (124)
T ss_dssp HHHHHHHHHHHCSSCCEE-ECCCCCHHH-------HHH--HHHHHHHHTCCE
T ss_pred HHHHHHHHHHHCCCCCEE-ECCCCCHHH-------HHH--HHHHHHHHCCCC
T ss_conf 999999999828854523-789999899-------999--999999958865
No 3
>d1vs6z1 d.325.1.2 (Z:1-70) Ribosomal protein L31p {Escherichia coli [TaxId: 562]}
Probab=3.49 E-value=1e+02 Score=12.15 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=13.7
Q ss_pred HCCCCCCCCCCCCCHHHHHHC
Q ss_conf 200232013445201442104
Q gi|254781222|r 17 QQSSTDRYGRIEPMTKKYKIT 37 (70)
Q Consensus 17 qqsstdrygriepmtkkykit 37 (70)
+|...|.-||||-..++|...
T Consensus 47 ~q~~~dt~GRVekF~krf~~~ 67 (70)
T d1vs6z1 47 KQRDVATGGRVDRFNKRFNIP 67 (70)
T ss_dssp CCTTTTTHHHHSCSSTTTTTT
T ss_pred CEEEEECCCCHHHHHHHHCCC
T ss_conf 787861467499998766553
No 4
>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.00 E-value=1.7e+02 Score=11.08 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=14.9
Q ss_pred HHCHHHHHHHHHHHHHHH
Q ss_conf 104899999999888887
Q gi|254781222|r 35 KITKEEHRVFSECHRIRA 52 (70)
Q Consensus 35 kitkeehrvfsechrira 52 (70)
..|+||.++..|..+|-.
T Consensus 79 g~t~EE~K~~~Et~KIL~ 96 (190)
T d2hjsa2 79 GHSAIERRIFAEVQALLG 96 (190)
T ss_dssp SCBHHHHHHHHHHHHHTG
T ss_pred CCCHHHHHHHHHHHHHCC
T ss_conf 110024554444444304
No 5
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=2.79 E-value=1.8e+02 Score=10.95 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=16.3
Q ss_pred HHCHHHHHHHHHHHHHHHHH
Q ss_conf 10489999999988888763
Q gi|254781222|r 35 KITKEEHRVFSECHRIRALR 54 (70)
Q Consensus 35 kitkeehrvfsechriralr 54 (70)
-.|+||.++-.|+++|-.+-
T Consensus 104 G~t~EE~K~~~EtrKIL~~~ 123 (221)
T d1t4ba2 104 GQSREEWKGQAETNKILNTS 123 (221)
T ss_dssp SCBHHHHHHHHHHHHHHTCS
T ss_pred CEECHHHHHHHHHHHHHCCC
T ss_conf 11203488899898553346
No 6
>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]}
Probab=2.31 E-value=2.1e+02 Score=10.61 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=18.9
Q ss_pred CHHHHHH----HHHHHHHHHHHHHHHHHH---HHHHHHH
Q ss_conf 4899999----999888887633214332---1100110
Q gi|254781222|r 37 TKEEHRV----FSECHRIRALRGFNDVKK---GALGGFY 68 (70)
Q Consensus 37 tkeehrv----fsechriralrgfndvkk---galggfy 68 (70)
|.||..- |-+--+--||.||||-.- -|.--||
T Consensus 164 t~ee~~~F~~efe~~wk~~al~gFNddDi~AReamq~FY 202 (242)
T d2de6a2 164 NDEERKKYEQEFESKWKPMALEGFNNDDIWAREAMVDFY 202 (242)
T ss_dssp SHHHHHHHHHHHHHTHHHHTTTTTTHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 888999999999998889876177601489998755551
No 7
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=2.18 E-value=2.2e+02 Score=10.51 Aligned_cols=16 Identities=25% Similarity=0.140 Sum_probs=12.0
Q ss_pred HHHCHHHHHHHHHHHH
Q ss_conf 2104899999999888
Q gi|254781222|r 34 YKITKEEHRVFSECHR 49 (70)
Q Consensus 34 ykitkeehrvfsechr 49 (70)
..-|.|+|+.|-+...
T Consensus 8 ~~WT~elH~~Fv~Av~ 23 (64)
T d1irza_ 8 VLWTHELHNKFLAAVD 23 (64)
T ss_dssp CSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 9899999999999999
No 8
>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]}
Probab=2.14 E-value=2e+02 Score=10.70 Aligned_cols=19 Identities=42% Similarity=0.468 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHCHHHHHH
Q ss_conf 3445201442104899999
Q gi|254781222|r 25 GRIEPMTKKYKITKEEHRV 43 (70)
Q Consensus 25 griepmtkkykitkeehrv 43 (70)
.||....|..-|||||-.-
T Consensus 67 nridgvckslyitkeelhq 85 (106)
T d1f5qb2 67 NRIDGVCKSLYITKEELHQ 85 (106)
T ss_dssp HHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHEECHHHHHH
T ss_conf 5433346663462999986
No 9
>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}
Probab=2.10 E-value=2.2e+02 Score=10.44 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999998888876
Q gi|254781222|r 42 RVFSECHRIRAL 53 (70)
Q Consensus 42 rvfsechriral 53 (70)
-.|++...||.-
T Consensus 61 ~L~q~~~~ir~~ 72 (78)
T d2fzta1 61 ALFQEINVIREA 72 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999889889
No 10
>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]}
Probab=2.03 E-value=2e+02 Score=10.65 Aligned_cols=11 Identities=45% Similarity=0.788 Sum_probs=6.3
Q ss_pred HHHHHHHHHCC
Q ss_conf 32110011019
Q gi|254781222|r 60 KKGALGGFYRR 70 (70)
Q Consensus 60 kkgalggfyrr 70 (70)
-||.|.|+|.|
T Consensus 48 Lkg~l~g~wSr 58 (83)
T d2a6sa1 48 LKHNLSGFWSR 58 (83)
T ss_dssp CCGGGTTCEEE
T ss_pred CCCCCCCEEEE
T ss_conf 33787888999
Done!