RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781222|ref|YP_003065635.1| hypothetical protein
CLIBASIA_05645 [Candidatus Liberibacter asiaticus str. psy62]
         (70 letters)



>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella
          enterica [TaxId: 28901]}
          Length = 320

 Score = 49.1 bits (116), Expect = 1e-07
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 31 TKKYKITKEEHRVFSECHRIRALRGFNDVKKGALGGF 67
           + +    +  +      ++ A+  FNDVK G  GG+
Sbjct: 8  PRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGW 44


>d2axto1 f.4.1.4 (O:30-271) Manganese-stabilising protein, PsbO
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 242

 Score = 26.3 bits (58), Expect = 0.63
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 7/26 (26%)

Query: 4   AKEPLEQTIKGLFQQSSTDRYGRIEP 29
           A EP E  I+G+F       Y  IEP
Sbjct: 224 AHEPHEVKIQGVF-------YASIEP 242


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 262,636
Number of extensions: 9640
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 3
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)