BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781222|ref|YP_003065635.1| hypothetical protein
CLIBASIA_05645 [Candidatus Liberibacter asiaticus str. psy62]
         (70 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781222|ref|YP_003065635.1| hypothetical protein CLIBASIA_05645 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 70

 Score =  145 bits (367), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MIKAKEPLEQTIKGLFQQSSTDRYGRIEPMTKKYKITKEEHRVFSECHRIRALRGFNDVK 60
          MIKAKEPLEQTIKGLFQQSSTDRYGRIEPMTKKYKITKEEHRVFSECHRIRALRGFNDVK
Sbjct: 1  MIKAKEPLEQTIKGLFQQSSTDRYGRIEPMTKKYKITKEEHRVFSECHRIRALRGFNDVK 60

Query: 61 KGALGGFYRR 70
          KGALGGFYRR
Sbjct: 61 KGALGGFYRR 70


>gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 563

 Score = 24.3 bits (51), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 44  FSECHRIRALRGFNDVKKGALGG 66
           F   H +R L   +D KKG +GG
Sbjct: 454 FLGLHALRRLHNIDDAKKGEVGG 476


>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 257

 Score = 20.8 bits (42), Expect = 4.5,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 34  YKITKEEHRVFSECHRIRALRGFNDVKKGAL 64
           Y IT + + + S C+R+  ++    +K+G +
Sbjct: 205 YMITHDLNNLISTCNRVAVIQKKGIMKEGTI 235


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.138    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,455
Number of Sequences: 1233
Number of extensions: 1167
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 70
length of database: 328,796
effective HSP length: 41
effective length of query: 29
effective length of database: 278,243
effective search space:  8069047
effective search space used:  8069047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.0 bits)
S2: 31 (16.5 bits)