HHsearch alignment for GI: 254781223 and conserved domain: COG1208
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].
Probab=98.89 E-value=3.9e-09 Score=54.60 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=52.2
Q ss_pred EEECCCCEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 09928839979815457543231122222221001135520221111222110112222211011111111243220139
Q gi|254781223|r 11 ATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR 90 (110)
Q Consensus 11 a~I~~~~~I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i~~~~~i~~~~~I~~~~~ 90 (110)
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i-~~Sii~~~~~i~~~~~i~-~sIi~~~~~ig~~~~i~d-~~ 332 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEI-KNSIIMDNVVIGHGSYIG-DSIIGENCKIGASLIIGD-VV 332 (358)
T ss_pred EEEECCEEECCCCEECCCCEECCCCEECCCCEECCCCEE-EEEEEECCCEECCCCEEC-CEEECCCCEECCCCEEEE-EE
T ss_conf 388589498269789888486898789999888998778-754887787988888882-069818859998615701-58
Q ss_pred ECCCEEECCCCEEC
Q ss_conf 74984998888996
Q gi|254781223|r 91 VRGNAVVGGDTVVE 104 (110)
Q Consensus 91 I~~~~~I~~~~~I~ 104 (110)
T Consensus 333 ~g~~~~i~~g~~~~ 346 (358)
T COG1208 333 IGINSEILPGVVVG 346 (358)
T ss_pred ECCCEEECCCEEEC
T ss_conf 63660862761847