HHsearch alignment for GI: 254781223 and conserved domain: PRK13627
>PRK13627 carnitine operon protein CaiE; Provisional.
Probab=99.83 E-value=6.9e-21 Score=103.60 Aligned_cols=108 Identities=22% Similarity=0.278 Sum_probs=96.8
Q ss_pred CCCCEEECCCEEECCCCEECCCCEECCCCCCCCC---CCCCCCCCEEEEEEEEC----CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9687698897099288399798154575432311---22222221001135520----2211112221101122222110
Q gi|254781223|r 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSN---AEVSDNTYVRDNAKVGG----YAKVSGNASVGGNAIVRDTAEV 73 (110)
Q Consensus 1 i~~n~~I~~~a~I~~~~~I~~n~~I~~~~~i~~~---~~i~~~~~i~~~~~i~~----~~~i~~~~~i~~~~~~~~~~~i 73 (110)
T Consensus 13 i~~~afIap~A~viGdV~ig~~~sIw~~aVlRGD~~~I~IG~~tNIQD~~viH~~~~~~~~IG~~vtIGH~ailhg-c~I 91 (196)
T PRK13627 13 VHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG-CVI 91 (196)
T ss_pred CCCCEEECCCCEEEEEEEECCCCEECCCEEEECCCCCEEECCCCEECCCCEEECCCCCCCEECCCEEECCCEEEEE-EEE
T ss_conf 2998388999989984999999889777089568871798998676798378148999858889805878729963-499
Q ss_pred CCCCCCCCCCCCCCCEEECCCEEECCCCEECCCEEE
Q ss_conf 111111112432201397498499888899698097
Q gi|254781223|r 74 GGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109 (110)
Q Consensus 74 ~~~~~i~~~~~I~~~~~I~~~~~I~~~~~I~~~~~i 109 (110)
T Consensus 92 gd~~lIGmgavVldga~Ig~~~iI~AgslV~~g~~i 127 (196)
T PRK13627 92 GRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQG 127 (196)
T ss_pred ECCCEECCCCEEECCCEECCCCEECCCCEECCCCCC
T ss_conf 489788469799288899999899768645799493