HHsearch alignment for GI: 254781223 and conserved domain: PRK13627

>PRK13627 carnitine operon protein CaiE; Provisional.
Probab=99.83  E-value=6.9e-21  Score=103.60  Aligned_cols=108  Identities=22%  Similarity=0.278  Sum_probs=96.8

Q ss_pred             CCCCEEECCCEEECCCCEECCCCEECCCCCCCCC---CCCCCCCCEEEEEEEEC----CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9687698897099288399798154575432311---22222221001135520----2211112221101122222110
Q gi|254781223|r    1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSN---AEVSDNTYVRDNAKVGG----YAKVSGNASVGGNAIVRDTAEV   73 (110)
Q Consensus         1 i~~n~~I~~~a~I~~~~~I~~n~~I~~~~~i~~~---~~i~~~~~i~~~~~i~~----~~~i~~~~~i~~~~~~~~~~~i   73 (110)
T Consensus        13 i~~~afIap~A~viGdV~ig~~~sIw~~aVlRGD~~~I~IG~~tNIQD~~viH~~~~~~~~IG~~vtIGH~ailhg-c~I   91 (196)
T PRK13627         13 VHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG-CVI   91 (196)
T ss_pred             CCCCEEECCCCEEEEEEEECCCCEECCCEEEECCCCCEEECCCCEECCCCEEECCCCCCCEECCCEEECCCEEEEE-EEE
T ss_conf             2998388999989984999999889777089568871798998676798378148999858889805878729963-499


Q ss_pred             CCCCCCCCCCCCCCCEEECCCEEECCCCEECCCEEE
Q ss_conf             111111112432201397498499888899698097
Q gi|254781223|r   74 GGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL  109 (110)
Q Consensus        74 ~~~~~i~~~~~I~~~~~I~~~~~I~~~~~I~~~~~i  109 (110)
T Consensus        92 gd~~lIGmgavVldga~Ig~~~iI~AgslV~~g~~i  127 (196)
T PRK13627         92 GRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQG  127 (196)
T ss_pred             ECCCEECCCCEEECCCEECCCCEECCCCEECCCCCC
T ss_conf             489788469799288899999899768645799493