HHsearch alignment for GI: 254781223 and conserved domain: TIGR01852
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137 This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=99.75 E-value=1.6e-18 Score=93.73 Aligned_cols=107 Identities=17% Similarity=0.262 Sum_probs=61.6
Q ss_pred CCCCEEECCCEEECCCCEECCCCEECCCCCCCCCCC-------------------------------------CCCCCCE
Q ss_conf 968769889709928839979815457543231122-------------------------------------2222210
Q gi|254781223|r 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAE-------------------------------------VSDNTYV 43 (110)
Q Consensus 1 i~~n~~I~~~a~I~~~~~I~~n~~I~~~~~i~~~~~-------------------------------------i~~~~~i 43 (110)
T Consensus 31 ig~g~~l~shV~i~G~T~iG~~~~i~p~A~iG~~PQdlky~GE~t~l~IG~~n~IRE~VTi~~GT~~g~g~T~iG~~nll 110 (257)
T TIGR01852 31 IGDGVELKSHVVIEGHTTIGEGTKIFPGAVIGGEPQDLKYKGERTELIIGDNNTIREFVTINRGTKSGGGVTSIGNNNLL 110 (257)
T ss_pred ECCCCEECCCEEEECCEEECCCCEEECCEEECCCCCCCEECCCCCEEEECCCCEEEEEEEECCCCCCCCCEEEECCCCEE
T ss_conf 86885875736896770878998880760767988565014870179988965697557850662588888998887657
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEECCCCEECCCE
Q ss_conf 0113552022111122211011222221101111111124322013974984998888996980
Q gi|254781223|r 44 RDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDT 107 (110)
Q Consensus 44 ~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~I~~~~~I~~~~ 107 (110)
T Consensus 111 MAysHvAHDC~vGn~vv~aN~a~LAGHV~vgD~a~iGG~~avHQFvRIG~~aMigG~s~v~~Dv 174 (257)
T TIGR01852 111 MAYSHVAHDCVVGNHVVLANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDV 174 (257)
T ss_pred CCCCEEEECCEECCEEEEECCCEECEEEEECCEEEECCCCCEEEEEEEHHHHHHHHHCCCCCCC
T ss_conf 2053561243688816981363122279988899977897211013300023221200246787