HHsearch alignment for GI: 254781223 and conserved domain: TIGR02287
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974 Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..
Probab=99.58 E-value=1.3e-15 Score=81.57 Aligned_cols=102 Identities=24% Similarity=0.287 Sum_probs=72.3
Q ss_pred CCCCEEECCCEEECCCCEECCCCEECCCCCCCCC---CCCCCCCCEEEEEEEE----CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9687698897099288399798154575432311---2222222100113552----02211112221101122222110
Q gi|254781223|r 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSN---AEVSDNTYVRDNAKVG----GYAKVSGNASVGGNAIVRDTAEV 73 (110)
Q Consensus 1 i~~n~~I~~~a~I~~~~~I~~n~~I~~~~~i~~~---~~i~~~~~i~~~~~i~----~~~~i~~~~~i~~~~~~~~~~~i 73 (110)
T Consensus 11 Vhp~ayVHP~AVLiGDVi~G~rcYvgPlASLRGDFGrIvl~eGAN~QD~CVMHGFPg~DTvVeenGHvGHgAiLH-gC~v 89 (193)
T TIGR02287 11 VHPEAYVHPDAVLIGDVIVGKRCYVGPLASLRGDFGRIVLKEGANVQDTCVMHGFPGQDTVVEENGHVGHGAILH-GCRV 89 (193)
T ss_pred CCCCCCCCCCEEEEEEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCEECCCCCCCEEEECCCCCCCCEEEC-CCEE
T ss_conf 698773468637862178879524676631357757257534886146424367299886760688233212351-5463
Q ss_pred CCCCCCCCCCCCCCCEEECCCEEECCCCEE
Q ss_conf 111111112432201397498499888899
Q gi|254781223|r 74 GGDAFVIGFTVISGNARVRGNAVVGGDTVV 103 (110)
Q Consensus 74 ~~~~~i~~~~~I~~~~~I~~~~~I~~~~~I 103 (110)
T Consensus 90 grnaLvGMNAVVMDgAvige~sIVaA~aFV 119 (193)
T TIGR02287 90 GRNALVGMNAVVMDGAVIGERSIVAASAFV 119 (193)
T ss_pred CCCCEECCCEEEECCCEECCCCCEEHHHHH
T ss_conf 252311165066166466774120020334