HHsearch alignment for GI: 254781223 and conserved domain: TIGR02287

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974 Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..
Probab=99.58  E-value=1.3e-15  Score=81.57  Aligned_cols=102  Identities=24%  Similarity=0.287  Sum_probs=72.3

Q ss_pred             CCCCEEECCCEEECCCCEECCCCEECCCCCCCCC---CCCCCCCCEEEEEEEE----CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9687698897099288399798154575432311---2222222100113552----02211112221101122222110
Q gi|254781223|r    1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSN---AEVSDNTYVRDNAKVG----GYAKVSGNASVGGNAIVRDTAEV   73 (110)
Q Consensus         1 i~~n~~I~~~a~I~~~~~I~~n~~I~~~~~i~~~---~~i~~~~~i~~~~~i~----~~~~i~~~~~i~~~~~~~~~~~i   73 (110)
T Consensus        11 Vhp~ayVHP~AVLiGDVi~G~rcYvgPlASLRGDFGrIvl~eGAN~QD~CVMHGFPg~DTvVeenGHvGHgAiLH-gC~v   89 (193)
T TIGR02287        11 VHPEAYVHPDAVLIGDVIVGKRCYVGPLASLRGDFGRIVLKEGANVQDTCVMHGFPGQDTVVEENGHVGHGAILH-GCRV   89 (193)
T ss_pred             CCCCCCCCCCEEEEEEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCEECCCCCCCEEEECCCCCCCCEEEC-CCEE
T ss_conf             698773468637862178879524676631357757257534886146424367299886760688233212351-5463


Q ss_pred             CCCCCCCCCCCCCCCEEECCCEEECCCCEE
Q ss_conf             111111112432201397498499888899
Q gi|254781223|r   74 GGDAFVIGFTVISGNARVRGNAVVGGDTVV  103 (110)
Q Consensus        74 ~~~~~i~~~~~I~~~~~I~~~~~I~~~~~I  103 (110)
T Consensus        90 grnaLvGMNAVVMDgAvige~sIVaA~aFV  119 (193)
T TIGR02287        90 GRNALVGMNAVVMDGAVIGERSIVAASAFV  119 (193)
T ss_pred             CCCCEECCCEEEECCCEECCCCCEEHHHHH
T ss_conf             252311165066166466774120020334