HHsearch alignment for GI: 254781223 and conserved domain: TIGR02287
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974 Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..
Probab=98.92 E-value=8.2e-10 Score=57.43 Aligned_cols=90 Identities=24% Similarity=0.254 Sum_probs=48.8
Q ss_pred ECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECC---CCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 9798154575432311222222210011355202---21111222110112222----2110111111112432201397
Q gi|254781223|r 19 VSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGY---AKVSGNASVGGNAIVRD----TAEVGGDAFVIGFTVISGNARV 91 (110)
Q Consensus 19 I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~i~~~~~i~~~~~~~~----~~~i~~~~~i~~~~~I~~~~~I 91 (110)
T Consensus 11 Vhp~ayVHP~AVLiGDVi~G~rcYvgPlASLRGDFGrIvl~eGAN~QD~CVMHGFPg~DTvVeenGHvGHgAiLH-gC~v 89 (193)
T TIGR02287 11 VHPEAYVHPDAVLIGDVIVGKRCYVGPLASLRGDFGRIVLKEGANVQDTCVMHGFPGQDTVVEENGHVGHGAILH-GCRV 89 (193)
T ss_pred CCCCCCCCCCEEEEEEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCEECCCCCCCEEEECCCCCCCCEEEC-CCEE
T ss_conf 698773468637862178879524676631357757257534886146424367299886760688233212351-5463
Q ss_pred CCCEEECCCCEECCCEEE
Q ss_conf 498499888899698097
Q gi|254781223|r 92 RGNAVVGGDTVVEGDTVL 109 (110)
Q Consensus 92 ~~~~~I~~~~~I~~~~~i 109 (110)
T Consensus 90 grnaLvGMNAVVMDgAvi 107 (193)
T TIGR02287 90 GRNALVGMNAVVMDGAVI 107 (193)
T ss_pred CCCCEECCCEEEECCCEE
T ss_conf 252311165066166466