HHsearch alignment for GI: 254781223 and conserved domain: cd00208
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.35 E-value=1.3e-12 Score=69.05 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=46.3
Q ss_pred CCCEEECCCEEECCCCEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68769889709928839979815457543231122222221001135520221111222110112222211011111111
Q gi|254781223|r 2 YDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIG 81 (110)
Q Consensus 2 ~~n~~I~~~a~I~~~~~I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i~~~~~i~~ 81 (110)
T Consensus 4 G~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~----------------------------~~~~~~~~Ig~~v~Ig~ 55 (78)
T cd00208 4 GEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATG----------------------------PNEKNPTIIGDNVEIGA 55 (78)
T ss_pred CCCCEECCCCEECCCEEECCCCEECCCCEEEECCC----------------------------CCCCCCCEECCCEEECC
T ss_conf 99849999849988269999998999989963798----------------------------86678989999969986
Q ss_pred CCCCCCCEEECCCEEECCCCEEC
Q ss_conf 24322013974984998888996
Q gi|254781223|r 82 FTVISGNARVRGNAVVGGDTVVE 104 (110)
Q Consensus 82 ~~~I~~~~~I~~~~~I~~~~~I~ 104 (110)
T Consensus 56 ~a~I~~gv~IGdn~~IgagavVt 78 (78)
T cd00208 56 NAVIHGGVKIGDNAVIGAGAVVT 78 (78)
T ss_pred CCEEECCEEECCCCEECCCCEEC
T ss_conf 89897981999999999885699