HHsearch alignment for GI: 254781223 and conserved domain: cd03350
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.79 E-value=1.5e-19 Score=98.06 Aligned_cols=104 Identities=22% Similarity=0.217 Sum_probs=86.5
Q ss_pred EEECCCEEECCCCEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC--------CCCCCC
Q ss_conf 698897099288399798154575432311222222210011355202211112221101122222--------110111
Q gi|254781223|r 5 AVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDT--------AEVGGD 76 (110)
Q Consensus 5 ~~I~~~a~I~~~~~I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~~~~~--------~~i~~~ 76 (110)
T Consensus 2 ~rI~P~A~I~~ga~IG~g~vI~~~a~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~g~~i~g~~~p~~~~~v~IeD~ 81 (139)
T cd03350 2 RRVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDD 81 (139)
T ss_pred EEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCCCCCCEECCC
T ss_conf 07499829889999999989988999843989898727866660268669999328988867844425764688688799
Q ss_pred CCCCCCCCCCCCEEECCCEEECCCCEECCCEE
Q ss_conf 11111243220139749849988889969809
Q gi|254781223|r 77 AFVIGFTVISGNARVRGNAVVGGDTVVEGDTV 108 (110)
Q Consensus 77 ~~i~~~~~I~~~~~I~~~~~I~~~~~I~~~~~ 108 (110)
T Consensus 82 ~~IGa~a~V~~Gv~IG~~avIGAGsVVtkdvp 113 (139)
T cd03350 82 VFIGANCEVVEGVIVGKGAVLAAGVVLTQSTP 113 (139)
T ss_pred EEEEECCEEECCCEECCCCEECCCCEEECCCC
T ss_conf 59930998946879999989997988918988